Variant report

Variant	rs9980855
Chromosome Location	chr21:37900971-37900972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37897297..37900061-chr21:37900789..37903284,3	K562	blood:
2	chr21:37900509..37902393-chr21:38014528..38016261,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11909578	0.92[EUR][1000 genomes]
rs13046506	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13049189	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13049736	0.92[EUR][1000 genomes]
rs1892908	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1892909	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2015187	0.86[EUR][1000 genomes]
rs2187304	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2835382	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2835383	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2835388	0.87[EUR][1000 genomes]
rs2835389	0.87[EUR][1000 genomes]
rs4817806	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4817807	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4817808	0.90[EUR][1000 genomes]
rs6517361	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs70940557	0.87[EUR][1000 genomes]
rs8128229	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs914148	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9305590	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9305591	0.93[EUR][1000 genomes]
rs9305592	0.93[EUR][1000 genomes]
rs9305594	0.92[EUR][1000 genomes]
rs9305595	0.92[EUR][1000 genomes]
rs9653721	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9981041	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37895800-37902600	Weak transcription	GM12878-XiMat	blood
2	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
3	chr21:37897600-37902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:37900800-37901200	Enhancers	Fetal Brain Male	brain
5	chr21:37900800-37901400	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links