Variant report

Variant	rs2835399
Chromosome Location	chr21:37968894-37968895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:37960058..37963190-chr21:37967136..37970728,3	K562	blood:
2	chr21:37966496..37969164-chr21:37974994..37977509,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11910519	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12386295	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12482375	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13047871	0.86[ASN][1000 genomes]
rs13050224	0.89[ASN][1000 genomes]
rs13050577	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13051386	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2032150	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2409822	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2734392	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2734393	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2835390	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2835394	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2835397	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835400	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2845783	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2845784	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2845785	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2845786	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2850085	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34053958	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34521064	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373349	0.82[ASN][1000 genomes]
rs377483	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs377777	0.86[ASN][1000 genomes]
rs382620	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs385073	0.83[ASN][1000 genomes]
rs386394	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs386752	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs390584	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs400731	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs405828	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs412510	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs419513	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420352	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs420885	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs425864	0.80[CHB][hapmap]
rs426275	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs430159	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs431741	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs432137	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs432294	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs432706	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4372989	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs437724	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs438064	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs438492	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs438706	0.83[ASN][1000 genomes]
rs441389	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs441524	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs450932	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs4528850	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7275576	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7280686	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7281637	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs876780	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9305597	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9983642	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2762111	chr21:37967924-38023546	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2835399	PSMG1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37965600-37973000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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