Variant report

Variant	rs34521064
Chromosome Location	chr21:37961732-37961733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:37851104..37852604-chr21:37960224..37961803,2	MCF-7	breast:
2	chr21:37794409..37795183-chr21:37961594..37962152,2	MCF-7	breast:
3	chr21:37791964..37792499-chr21:37961421..37962105,2	MCF-7	breast:
4	chr21:37876668..37877371-chr21:37961372..37962368,3	K562	blood:
5	chr21:37791981..37792888-chr21:37961351..37961894,3	K562	blood:
6	chr21:37790642..37792475-chr21:37961293..37963642,2	K562	blood:
7	chr21:37960058..37963190-chr21:37967136..37970728,3	K562	blood:
8	chr21:37876461..37877447-chr21:37961333..37962081,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000159261	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11910519	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12386295	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12482375	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13047871	0.88[ASN][1000 genomes]
rs13050224	0.91[ASN][1000 genomes]
rs13050577	0.97[ASN][1000 genomes]
rs13051386	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2032150	0.92[ASN][1000 genomes]
rs2409822	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2734392	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2734393	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2835390	0.88[ASN][1000 genomes]
rs2835394	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835397	0.98[ASN][1000 genomes]
rs2835399	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2835400	0.95[ASN][1000 genomes]
rs2845783	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2845784	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2845785	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2845786	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2850085	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34053958	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373349	0.84[ASN][1000 genomes]
rs377483	0.88[ASN][1000 genomes]
rs377777	0.88[ASN][1000 genomes]
rs382620	0.94[ASN][1000 genomes]
rs385073	0.85[ASN][1000 genomes]
rs386394	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs386752	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs390584	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs400731	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs405828	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs412510	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs419513	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420352	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs420885	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs426275	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs430159	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs431741	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs432137	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs432294	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs432706	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4372989	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs437724	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs438064	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs438492	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs438706	0.85[ASN][1000 genomes]
rs441389	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs441524	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs450932	0.88[ASN][1000 genomes]
rs4528850	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7275576	0.90[ASN][1000 genomes]
rs7280686	0.93[ASN][1000 genomes]
rs7281637	0.93[ASN][1000 genomes]
rs876780	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9305597	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9983642	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37955400-37965400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:37960400-37963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr21:37961200-37962000	Enhancers	Fetal Muscle Trunk	muscle
4	chr21:37961200-37962000	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr21:37961200-37962600	Enhancers	Fetal Lung	lung
6	chr21:37961400-37961800	Enhancers	Adipose Nuclei	Adipose
7	chr21:37961400-37962000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr21:37961400-37962000	Enhancers	Liver	Liver
9	chr21:37961400-37962000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr21:37961600-37961800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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