Variant report

Variant	rs28360888
Chromosome Location	chr4:151417645-151417646
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151411570..151413992-chr4:151416571..151418811,2	MCF-7	breast:
2	chr4:151416896..151419683-chr4:151431841..151434385,2	K562	blood:
3	chr4:151413682..151415486-chr4:151415860..151418340,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10009219	0.87[ASN][1000 genomes]
rs10021103	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10021676	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10027582	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10213297	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10471055	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11099767	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11099768	0.93[ASN][1000 genomes]
rs12500679	0.83[ASN][1000 genomes]
rs12507269	0.88[ASN][1000 genomes]
rs12511109	0.87[ASN][1000 genomes]
rs1504782	0.80[ASN][1000 genomes]
rs17026968	0.83[ASN][1000 genomes]
rs17026978	0.81[ASN][1000 genomes]
rs28367335	0.82[ASN][1000 genomes]
rs28373637	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28405183	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28446645	0.80[ASN][1000 genomes]
rs28447376	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28460294	0.80[ASN][1000 genomes]
rs28490505	0.83[ASN][1000 genomes]
rs28533051	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28580527	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28639783	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28643547	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3922785	0.88[ASN][1000 genomes]
rs4419456	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59515357	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61520262	0.87[ASN][1000 genomes]
rs61655905	0.83[ASN][1000 genomes]
rs6813081	0.93[ASN][1000 genomes]
rs6832909	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6843987	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6847441	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6856287	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72955894	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72957852	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72957869	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72957890	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72959804	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7659148	0.87[ASN][1000 genomes]
rs7664323	0.87[ASN][1000 genomes]
rs7674390	0.82[ASN][1000 genomes]
rs7691319	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7691594	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7699621	0.88[ASN][1000 genomes]
rs7699721	0.87[ASN][1000 genomes]
rs9307878	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9761873	0.96[ASN][1000 genomes]
rs9968356	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151374400-151419000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:151382400-151422400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:151385400-151442200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:151387600-151419000	Weak transcription	K562	blood
5	chr4:151387800-151423000	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:151392200-151424400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:151395400-151424000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:151400000-151434200	Weak transcription	Primary T cells from cord blood	blood
9	chr4:151400400-151422000	Weak transcription	Osteobl	bone
10	chr4:151408400-151422200	Weak transcription	Primary B cells from cord blood	blood
11	chr4:151409000-151422000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:151409000-151456600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:151410000-151444400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:151412000-151424200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:151412200-151424200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:151417000-151418800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:151417200-151418200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:151417600-151418600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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