Variant report

Variant	rs7664323
Chromosome Location	chr4:151367194-151367195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151362524..151364031-chr4:151365123..151367486,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10003085	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes]
rs10007294	0.90[EUR][1000 genomes]
rs10009219	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10021103	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10021676	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021938	0.90[EUR][1000 genomes]
rs10022107	0.90[EUR][1000 genomes]
rs10027582	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10213297	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10471055	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099767	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11099768	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12501888	1.00[GIH][hapmap]
rs12503255	0.90[EUR][1000 genomes]
rs12507269	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12511109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512965	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs13434795	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1504782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17632340	0.90[EUR][1000 genomes]
rs28360888	0.87[ASN][1000 genomes]
rs28373637	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28373995	0.90[EUR][1000 genomes]
rs28405183	0.81[AMR][1000 genomes]
rs28446645	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28447376	0.81[AMR][1000 genomes]
rs28456277	0.90[EUR][1000 genomes]
rs28460294	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28490505	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28533051	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28573941	0.90[EUR][1000 genomes]
rs28580527	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28587623	0.90[EUR][1000 genomes]
rs28639783	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28643547	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28680477	0.90[EUR][1000 genomes]
rs28797934	0.87[AMR][1000 genomes]
rs3922785	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4419456	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57925391	0.90[EUR][1000 genomes]
rs59515357	0.81[AMR][1000 genomes]
rs61520262	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61655905	0.87[AMR][1000 genomes]
rs6813081	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6832909	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843987	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6847441	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6848342	0.90[EUR][1000 genomes]
rs6856287	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6858706	0.84[JPT][hapmap]
rs72953804	0.90[EUR][1000 genomes]
rs72955819	0.90[EUR][1000 genomes]
rs72955894	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72957852	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72957869	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72957890	0.81[AMR][1000 genomes]
rs72959804	0.81[AMR][1000 genomes]
rs7659148	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7674390	0.81[AMR][1000 genomes]
rs7691319	0.81[AMR][1000 genomes]
rs7691594	0.81[AMR][1000 genomes]
rs7699621	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7699721	0.81[ASN][1000 genomes]
rs9307875	0.90[EUR][1000 genomes]
rs9307878	0.87[ASN][1000 genomes]
rs9761873	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9968356	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9992387	0.90[EUR][1000 genomes]
rs9993229	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:151290200-151367400	Weak transcription	K562	blood
3	chr4:151319000-151371000	Weak transcription	Left Ventricle	heart
4	chr4:151333000-151408000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:151344800-151387200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:151345000-151389000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:151345200-151371200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:151352600-151377000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:151356200-151386800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:151356600-151371800	Weak transcription	Fetal Intestine Small	intestine
11	chr4:151356600-151411200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:151356800-151376800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:151356800-151377400	Weak transcription	Primary T cells from cord blood	blood
14	chr4:151356800-151391200	Weak transcription	Fetal Intestine Large	intestine
15	chr4:151357600-151369600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr4:151358000-151370800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:151358400-151377000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:151358400-151398600	Weak transcription	GM12878-XiMat	blood
19	chr4:151358600-151377400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:151359200-151368400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:151364000-151367400	Weak transcription	Fetal Heart	heart
22	chr4:151364600-151387400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:151364600-151414800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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