Variant report

Variant	rs6858706
Chromosome Location	chr4:151510151-151510152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151507320..151511158-chr4:151523228..151526308,4	K562	blood:
2	chr4:151502315..151503833-chr4:151508348..151510402,2	K562	blood:
3	chr4:151502315..151504673-chr4:151508348..151511565,3	K562	blood:
4	chr4:151464421..151466490-chr4:151508442..151510981,2	K562	blood:

Variant related genes	Relation type
ENSG00000181541	Chromatin interaction
ENSG00000198589	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10003085	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10004115	0.86[EUR][1000 genomes]
rs10009219	0.88[ASN][1000 genomes]
rs10017937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021103	0.81[ASN][1000 genomes]
rs10021640	0.86[EUR][1000 genomes]
rs10026518	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10027582	0.84[ASN][1000 genomes]
rs10028040	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10034965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10213297	0.82[ASN][1000 genomes]
rs11099767	0.82[ASN][1000 genomes]
rs12500679	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12505123	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12507269	0.83[AMR][1000 genomes]
rs1289963	0.82[EUR][1000 genomes]
rs13105060	0.92[JPT][hapmap]
rs13340305	0.84[EUR][1000 genomes]
rs1504782	0.84[JPT][hapmap]
rs17026968	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17026978	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17027065	0.91[EUR][1000 genomes]
rs17027116	0.86[EUR][1000 genomes]
rs1966844	0.82[EUR][1000 genomes]
rs28367335	0.91[ASN][1000 genomes]
rs28379788	0.86[EUR][1000 genomes]
rs28405183	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28447376	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28501240	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28521457	0.91[EUR][1000 genomes]
rs28533051	0.80[ASN][1000 genomes]
rs28539520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28540258	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28544421	0.90[EUR][1000 genomes]
rs28558492	0.86[EUR][1000 genomes]
rs28572569	0.86[EUR][1000 genomes]
rs28580527	0.82[ASN][1000 genomes]
rs28591543	0.86[EUR][1000 genomes]
rs28627398	0.86[EUR][1000 genomes]
rs28630451	0.86[EUR][1000 genomes]
rs28641948	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28797934	0.89[ASN][1000 genomes]
rs28802622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs294528	0.82[EUR][1000 genomes]
rs3922785	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs4260528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4309819	0.92[JPT][hapmap]
rs4336207	1.00[CEU][hapmap]
rs57790879	0.91[EUR][1000 genomes]
rs59515357	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61655905	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6813081	0.84[ASN][1000 genomes]
rs6835367	0.92[JPT][hapmap]
rs6843987	0.82[ASN][1000 genomes]
rs6847441	0.87[ASN][1000 genomes]
rs6849364	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72957852	0.82[ASN][1000 genomes]
rs72957869	0.84[ASN][1000 genomes]
rs72957890	0.87[ASN][1000 genomes]
rs72959804	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7655913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7659148	0.88[ASN][1000 genomes]
rs7674390	0.83[ASN][1000 genomes]
rs7691319	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7691594	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7699621	0.89[ASN][1000 genomes]
rs7699721	0.88[ASN][1000 genomes]
rs9307878	0.82[ASN][1000 genomes]
rs9761873	0.82[ASN][1000 genomes]
rs9884181	1.00[CEU][hapmap]
rs9884732	0.91[EUR][1000 genomes]
rs9968356	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv4547	chr4:151486280-151531479	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151486600-151510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:151497600-151535400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:151499000-151513000	Active TSS	Colon Smooth Muscle	Colon
5	chr4:151499000-151513200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr4:151500000-151543400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:151500800-151511800	Active TSS	Osteobl	bone
8	chr4:151500800-151520000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:151501200-151559800	Weak transcription	Ovary	ovary
10	chr4:151501400-151514800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:151501800-151512400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:151504600-151520200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:151504800-151512800	Weak transcription	HepG2	liver
14	chr4:151505000-151510400	Weak transcription	K562	blood
15	chr4:151505000-151519600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:151505000-151522000	Weak transcription	NHEK	skin
17	chr4:151505200-151510400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:151505200-151511400	Weak transcription	Psoas Muscle	Psoas
19	chr4:151505200-151512600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:151505200-151513000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:151505200-151513400	Weak transcription	Lung	lung
22	chr4:151505200-151520200	Weak transcription	Aorta	Aorta
23	chr4:151505200-151521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:151505200-151521400	Weak transcription	Esophagus	oesophagus
25	chr4:151505200-151522000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:151505200-151522000	Weak transcription	Spleen	Spleen
27	chr4:151505400-151510200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:151505400-151511000	Active TSS	Rectal Smooth Muscle	rectum
29	chr4:151505400-151512000	Weak transcription	Gastric	stomach
30	chr4:151505400-151512600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:151505400-151512800	Active TSS	Fetal Intestine Small	intestine
32	chr4:151505400-151513000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:151505400-151520000	Weak transcription	Left Ventricle	heart
34	chr4:151505400-151520400	Weak transcription	Dnd41	blood
35	chr4:151505400-151521800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:151505400-151521800	Weak transcription	Thymus	Thymus
37	chr4:151505400-151522000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:151505400-151523600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:151505400-151524200	Weak transcription	Pancreas	Pancrea
40	chr4:151505400-151542200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:151505600-151519800	Weak transcription	Adipose Nuclei	Adipose
42	chr4:151505800-151510600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:151506000-151521400	Weak transcription	Fetal Stomach	stomach
44	chr4:151506000-151522000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:151507000-151510600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:151507200-151511800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:151507200-151512600	Weak transcription	NH-A	brain
48	chr4:151507200-151512800	Weak transcription	Colonic Mucosa	Colon
49	chr4:151507400-151512000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr4:151507600-151510200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links