Variant report

Variant	rs4336207
Chromosome Location	chr4:151602084-151602085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:151601753-151602161	SK-N-SH_RA	brain:	n/a	chr4:151601939-151601947
2	EP300	chr4:151601793-151602139	SK-N-SH_RA	brain:	n/a	chr4:151601939-151601947

Variant related genes	Relation type
LRBA	TF binding region

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10000193	0.96[ASN][1000 genomes]
rs10003085	1.00[CEU][hapmap]
rs10004115	0.84[AFR][1000 genomes]
rs10006912	0.94[ASN][1000 genomes]
rs10013523	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10018648	0.96[ASN][1000 genomes]
rs10021640	0.81[AFR][1000 genomes]
rs10027710	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10028040	0.87[AFR][1000 genomes]
rs10028965	0.96[ASN][1000 genomes]
rs10034695	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10520078	0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10857249	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857251	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11099775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1148645	0.87[EUR][1000 genomes]
rs1148652	0.89[EUR][1000 genomes]
rs1148656	1.00[YRI][hapmap]
rs11934912	0.94[ASN][1000 genomes]
rs1201214	0.89[EUR][1000 genomes]
rs12505967	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12640376	0.96[ASN][1000 genomes]
rs13103081	0.96[ASN][1000 genomes]
rs13105060	0.87[JPT][hapmap]
rs13121304	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125957	0.94[ASN][1000 genomes]
rs13128052	0.85[ASN][1000 genomes]
rs13130300	0.94[ASN][1000 genomes]
rs13145181	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13145482	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13340305	0.87[AFR][1000 genomes]
rs1451633	0.95[ASN][1000 genomes]
rs1451635	0.93[ASN][1000 genomes]
rs1470763	0.96[ASN][1000 genomes]
rs17027065	0.85[AFR][1000 genomes]
rs17027116	0.83[AFR][1000 genomes]
rs186080	0.80[GIH][hapmap]
rs1947315	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1993109	0.96[ASN][1000 genomes]
rs2198190	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28379788	0.98[AFR][1000 genomes]
rs28521457	0.85[AFR][1000 genomes]
rs28544421	0.94[AFR][1000 genomes]
rs28558492	0.84[AFR][1000 genomes]
rs28591543	0.81[AFR][1000 genomes]
rs28627398	0.81[AFR][1000 genomes]
rs28630451	0.85[AFR][1000 genomes]
rs294532	0.80[GIH][hapmap]
rs3922785	1.00[CEU][hapmap]
rs4235251	0.94[ASN][1000 genomes]
rs4309819	0.86[JPT][hapmap]
rs4318628	0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4455394	0.96[ASN][1000 genomes]
rs4501201	0.96[ASN][1000 genomes]
rs4696220	0.83[GIH][hapmap]
rs4696631	0.94[ASN][1000 genomes]
rs4696633	0.93[ASN][1000 genomes]
rs4696636	0.89[EUR][1000 genomes]
rs4696637	0.89[EUR][1000 genomes]
rs57790879	0.83[AFR][1000 genomes]
rs6822633	0.96[ASN][1000 genomes]
rs6825077	0.89[EUR][1000 genomes]
rs6834834	0.96[ASN][1000 genomes]
rs6835367	0.82[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap]
rs6835970	0.96[ASN][1000 genomes]
rs6836017	0.80[GIH][hapmap]
rs6836854	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6837840	0.94[ASN][1000 genomes]
rs6838530	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6841524	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858706	1.00[CEU][hapmap]
rs7665654	0.94[ASN][1000 genomes]
rs7666190	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7672144	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7683591	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7690485	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691797	0.94[ASN][1000 genomes]
rs896405	0.91[ASN][1000 genomes]
rs9307879	0.83[ASN][1000 genomes]
rs9884181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884732	0.80[AFR][1000 genomes]
rs9884963	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996572	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9997773	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151571200-151604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:151577600-151637000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:151579400-151604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:151582200-151642800	Weak transcription	Left Ventricle	heart
6	chr4:151583400-151603400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:151586400-151604800	Weak transcription	HSMM	muscle
8	chr4:151587000-151603400	Weak transcription	Aorta	Aorta
9	chr4:151587000-151604600	Weak transcription	Small Intestine	intestine
10	chr4:151587400-151605000	Weak transcription	GM12878-XiMat	blood
11	chr4:151590800-151603200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:151591200-151607600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:151593200-151604400	Weak transcription	Primary B cells from cord blood	blood
14	chr4:151593200-151605200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:151593200-151610800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:151595000-151654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:151596000-151605800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:151596000-151608600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:151596400-151603200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:151596600-151602600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:151599600-151605800	Weak transcription	Fetal Lung	lung
22	chr4:151599600-151611200	Weak transcription	K562	blood
23	chr4:151599800-151603200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:151599800-151605000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:151599800-151605200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:151600000-151606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:151600600-151603000	Weak transcription	Fetal Kidney	kidney
28	chr4:151600800-151605000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:151600800-151606800	Weak transcription	Adipose Nuclei	Adipose
30	chr4:151601000-151602200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:151601000-151602600	Enhancers	Brain Substantia Nigra	brain
32	chr4:151601000-151602800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:151601200-151604800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:151601200-151605000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:151601400-151602400	Enhancers	Fetal Intestine Large	intestine
36	chr4:151601400-151604200	Weak transcription	NHDF-Ad	bronchial
37	chr4:151601400-151604600	Weak transcription	HMEC	breast
38	chr4:151601400-151606000	Weak transcription	Brain Angular Gyrus	brain
39	chr4:151601600-151604600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:151601600-151604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:151601600-151604600	Weak transcription	NHEK	skin
42	chr4:151601600-151605000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:151601600-151644400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr4:151601800-151602200	Enhancers	Fetal Intestine Small	intestine
45	chr4:151601800-151606000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:151602000-151602200	Active TSS	Brain Hippocampus Middle	brain
47	chr4:151602000-151603000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr4:151602000-151604400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:151602000-151606000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:151602000-151606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links