Variant report

Variant	rs896405
Chromosome Location	chr4:151678309-151678310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151676286..151678626-chr4:151716439..151719272,2	K562	blood:
2	chr4:151671631..151674534-chr4:151676384..151678400,2	MCF-7	breast:
3	chr4:151673272..151675372-chr4:151677013..151678722,2	K562	blood:
4	chr4:151678208..151679731-chr4:151682464..151684589,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10000193	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10006912	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10013523	0.94[ASN][1000 genomes]
rs10018648	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10025414	0.81[GIH][hapmap]
rs10027710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10028965	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10034695	0.96[ASN][1000 genomes]
rs10520078	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857249	0.94[ASN][1000 genomes]
rs10857251	0.95[ASN][1000 genomes]
rs11099775	0.90[ASN][1000 genomes]
rs1148656	0.80[JPT][hapmap]
rs11726025	0.82[ASN][1000 genomes]
rs11934912	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12505967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508892	0.81[GIH][hapmap]
rs12640376	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12641297	1.00[ASW][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap]
rs13103081	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13105060	0.80[JPT][hapmap]
rs13112801	0.86[EUR][1000 genomes]
rs13119454	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13121304	0.94[ASN][1000 genomes]
rs13125957	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13128052	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13130300	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13145181	0.94[ASN][1000 genomes]
rs13145482	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1451633	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1451635	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1470763	0.88[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs186080	0.86[GIH][hapmap]
rs1947315	0.94[ASN][1000 genomes]
rs1993109	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2098927	0.87[JPT][hapmap];0.88[YRI][hapmap]
rs2198190	0.94[ASN][1000 genomes]
rs2407549	0.83[EUR][1000 genomes]
rs294532	0.86[GIH][hapmap]
rs4235251	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4309819	1.00[CEU][hapmap]
rs4318628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4336207	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs4355367	0.81[GIH][hapmap]
rs4455394	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4501201	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4533751	0.81[GIH][hapmap]
rs4696220	0.89[GIH][hapmap]
rs4696631	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4696633	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6822633	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834834	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835367	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.80[JPT][hapmap];0.83[MKK][hapmap];0.81[TSI][hapmap]
rs6835970	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836017	0.86[GIH][hapmap]
rs6836854	0.86[ASN][1000 genomes]
rs6837840	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6838530	0.95[ASN][1000 genomes]
rs6841524	0.90[ASN][1000 genomes]
rs6847725	0.81[GIH][hapmap]
rs7665654	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7666190	0.96[ASN][1000 genomes]
rs7672144	0.95[ASN][1000 genomes]
rs7683591	0.90[ASN][1000 genomes]
rs7690485	0.94[ASN][1000 genomes]
rs7690977	0.86[EUR][1000 genomes]
rs7691797	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307879	0.92[EUR][1000 genomes]
rs9884181	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs9884963	0.94[ASN][1000 genomes]
rs9996572	0.94[ASN][1000 genomes]
rs9997773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv1018404	chr4:151664438-152067409	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv1017850	chr4:151664438-152071876	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	esv2763837	chr4:151664438-152071888	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv870257	chr4:151665349-152072867	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv1015387	chr4:151673751-152071876	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv526976	chr4:151675819-152055073	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151645400-151695000	Weak transcription	Esophagus	oesophagus
2	chr4:151645600-151690400	Weak transcription	K562	blood
3	chr4:151645600-151749000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:151648200-151703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:151653000-151683800	Weak transcription	Fetal Kidney	kidney
6	chr4:151653000-151692200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:151653000-151694400	Weak transcription	Thymus	Thymus
8	chr4:151653000-151749200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:151653200-151686000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:151653200-151690600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:151655200-151685400	Weak transcription	HSMMtube	muscle
12	chr4:151656400-151681600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:151656600-151693400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:151657000-151700600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:151661000-151686000	Weak transcription	Fetal Intestine Small	intestine
16	chr4:151661000-151691200	Weak transcription	GM12878-XiMat	blood
17	chr4:151665000-151690400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:151665000-151690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:151666200-151680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:151668400-151680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:151668400-151725600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:151668800-151720000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:151669000-151693400	Weak transcription	Primary B cells from cord blood	blood
24	chr4:151670000-151692400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:151670600-151685400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:151670800-151690800	Weak transcription	Primary T cells from cord blood	blood
27	chr4:151671800-151679200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:151673200-151678600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:151674200-151722600	Weak transcription	Fetal Thymus	thymus
30	chr4:151675200-151695400	Weak transcription	Aorta	Aorta
31	chr4:151676400-151681400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:151676600-151692400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:151677200-151746000	Weak transcription	Ovary	ovary

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