Variant report

Variant	rs10013523
Chromosome Location	chr4:151644288-151644289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10000193	0.99[ASN][1000 genomes]
rs10004115	0.86[AFR][1000 genomes]
rs10006912	0.98[ASN][1000 genomes]
rs10018648	0.99[ASN][1000 genomes]
rs10021640	0.83[AFR][1000 genomes]
rs10027710	0.99[ASN][1000 genomes]
rs10028040	0.90[AFR][1000 genomes]
rs10028965	0.99[ASN][1000 genomes]
rs10034695	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10520078	0.97[ASN][1000 genomes]
rs10857249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857251	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099775	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148645	0.85[EUR][1000 genomes]
rs1148652	0.87[EUR][1000 genomes]
rs11726025	0.81[ASN][1000 genomes]
rs11934912	0.98[ASN][1000 genomes]
rs1201198	0.85[EUR][1000 genomes]
rs1201214	0.87[EUR][1000 genomes]
rs12505967	0.99[ASN][1000 genomes]
rs12640376	0.99[ASN][1000 genomes]
rs13103081	0.99[ASN][1000 genomes]
rs13119454	0.82[ASN][1000 genomes]
rs13121304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125957	0.98[ASN][1000 genomes]
rs13128052	0.89[ASN][1000 genomes]
rs13130300	0.98[ASN][1000 genomes]
rs13145181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145482	0.99[ASN][1000 genomes]
rs13340305	0.89[AFR][1000 genomes]
rs1451633	0.98[ASN][1000 genomes]
rs1451635	0.97[ASN][1000 genomes]
rs1470763	0.99[ASN][1000 genomes]
rs17027065	0.87[AFR][1000 genomes]
rs17027116	0.85[AFR][1000 genomes]
rs1947315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966844	0.81[AFR][1000 genomes]
rs1993109	0.99[ASN][1000 genomes]
rs2198190	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28379788	1.00[AFR][1000 genomes]
rs28521457	0.87[AFR][1000 genomes]
rs28544421	0.94[AFR][1000 genomes]
rs28558492	0.86[AFR][1000 genomes]
rs28591543	0.83[AFR][1000 genomes]
rs28627398	0.83[AFR][1000 genomes]
rs28630451	0.87[AFR][1000 genomes]
rs4235251	0.97[ASN][1000 genomes]
rs4318628	0.96[ASN][1000 genomes]
rs4336207	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4455394	0.99[ASN][1000 genomes]
rs4501201	0.99[ASN][1000 genomes]
rs4696631	0.97[ASN][1000 genomes]
rs4696633	0.97[ASN][1000 genomes]
rs4696636	0.87[EUR][1000 genomes]
rs4696637	0.87[EUR][1000 genomes]
rs57790879	0.85[AFR][1000 genomes]
rs6822633	0.99[ASN][1000 genomes]
rs6825077	0.87[EUR][1000 genomes]
rs6834834	0.99[ASN][1000 genomes]
rs6835970	0.99[ASN][1000 genomes]
rs6836854	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6837840	0.98[ASN][1000 genomes]
rs6838530	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6841524	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7665654	0.98[ASN][1000 genomes]
rs7666190	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672144	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7683591	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7690485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691797	0.98[ASN][1000 genomes]
rs896405	0.94[ASN][1000 genomes]
rs9884181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884732	0.83[AFR][1000 genomes]
rs9884963	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997773	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151595000-151654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:151601600-151644400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:151604800-151644600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:151636600-151644400	Weak transcription	HepG2	liver
6	chr4:151636600-151647000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:151636600-151647400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:151637000-151645000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:151639400-151645000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:151639600-151671400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:151640600-151652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:151641800-151644400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:151642200-151644400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:151642400-151644600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:151642600-151646600	Weak transcription	GM12878-XiMat	blood
16	chr4:151642600-151647200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:151642800-151644400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:151642800-151645200	Enhancers	Left Ventricle	heart
19	chr4:151643000-151644600	Weak transcription	Fetal Thymus	thymus
20	chr4:151643000-151645600	Enhancers	Pancreas	Pancrea
21	chr4:151643000-151646000	Enhancers	Fetal Intestine Large	intestine
22	chr4:151643000-151647600	Strong transcription	Primary B cells from cord blood	blood
23	chr4:151643200-151644800	Weak transcription	Fetal Stomach	stomach
24	chr4:151643400-151644400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:151643400-151647600	Strong transcription	Primary T cells from cord blood	blood
26	chr4:151643600-151644400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr4:151643600-151645400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:151643600-151645400	Enhancers	Liver	Liver
29	chr4:151643600-151645400	Enhancers	Right Ventricle	heart
30	chr4:151643600-151645600	Enhancers	Duodenum Mucosa	Duodenum
31	chr4:151643600-151654200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:151643800-151644600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:151643800-151644600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:151643800-151644800	Enhancers	Fetal Intestine Small	intestine
35	chr4:151643800-151645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:151643800-151645000	Enhancers	Fetal Heart	heart
37	chr4:151643800-151645200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr4:151643800-151645200	Enhancers	Lung	lung
39	chr4:151643800-151645200	Enhancers	Stomach Mucosa	stomach
40	chr4:151643800-151645200	Enhancers	NHEK	skin
41	chr4:151643800-151645400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:151643800-151645400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:151643800-151645400	Enhancers	Colonic Mucosa	Colon
44	chr4:151643800-151645400	Enhancers	Esophagus	oesophagus
45	chr4:151643800-151645400	Enhancers	Psoas Muscle	Psoas
46	chr4:151643800-151645400	Enhancers	Right Atrium	heart
47	chr4:151643800-151645400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr4:151643800-151645400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr4:151644000-151644400	Enhancers	HMEC	breast
50	chr4:151644000-151644600	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links