Variant report

Variant	rs1201198
Chromosome Location	chr4:151859674-151859675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151858185..151860880-chr4:151862516..151865242,2	K562	blood:
2	chr4:151858340..151860343-chr4:151871989..151873498,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10007479	0.91[AFR][1000 genomes]
rs10013523	0.85[EUR][1000 genomes]
rs10031124	0.88[ASN][1000 genomes]
rs10034695	0.85[EUR][1000 genomes]
rs10857249	0.85[EUR][1000 genomes]
rs10857251	0.87[EUR][1000 genomes]
rs10857253	0.84[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs11099780	0.91[ASN][1000 genomes]
rs11099781	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1148645	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1148652	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1148656	1.00[CEU][hapmap]
rs11733964	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs1201208	0.82[GIH][hapmap]
rs1201214	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505974	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs12512856	1.00[CEU][hapmap]
rs12641297	0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13101417	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs13121304	0.87[EUR][1000 genomes]
rs13126862	0.99[ASN][1000 genomes]
rs13141515	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs13145181	0.87[EUR][1000 genomes]
rs13145829	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs1365380	0.93[ASN][1000 genomes]
rs1549512	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1947315	0.85[EUR][1000 genomes]
rs2098927	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2198190	0.87[EUR][1000 genomes]
rs2280283	1.00[CEU][hapmap]
rs2407548	0.99[ASN][1000 genomes]
rs2407549	0.89[ASN][1000 genomes]
rs28415994	0.91[AFR][1000 genomes]
rs28537980	0.91[AFR][1000 genomes]
rs2897659	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs4696636	0.98[EUR][1000 genomes]
rs4696637	0.98[EUR][1000 genomes]
rs4696640	0.94[ASN][1000 genomes]
rs4696649	0.80[ASN][1000 genomes]
rs4696658	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs6535754	0.85[EUR][1000 genomes]
rs6535764	1.00[CEU][hapmap]
rs6825077	0.98[EUR][1000 genomes]
rs6836854	0.85[EUR][1000 genomes]
rs6838530	0.87[EUR][1000 genomes]
rs6848445	0.83[ASN][1000 genomes]
rs6849172	0.85[AFR][1000 genomes]
rs6854299	0.83[ASN][1000 genomes]
rs7441414	0.82[ASN][1000 genomes]
rs7656771	1.00[CEU][hapmap]
rs7657668	1.00[AFR][1000 genomes]
rs7664483	0.89[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs7666190	0.85[EUR][1000 genomes]
rs7672144	0.87[EUR][1000 genomes]
rs7677374	0.82[GIH][hapmap]
rs7690485	0.87[EUR][1000 genomes]
rs7691584	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs7693278	0.91[ASN][1000 genomes]
rs891689	0.82[GIH][hapmap]
rs9884181	0.85[EUR][1000 genomes]
rs9884963	0.85[EUR][1000 genomes]
rs9996572	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1018404	chr4:151664438-152067409	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1017850	chr4:151664438-152071876	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	esv2763837	chr4:151664438-152071888	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv870257	chr4:151665349-152072867	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1015387	chr4:151673751-152071876	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv526976	chr4:151675819-152055073	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv1025077	chr4:151682266-152035733	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv537303	chr4:151682266-152035733	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
13	nsv949066	chr4:151693149-152069566	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv949002	chr4:151693149-152095109	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv1031720	chr4:151708502-152071876	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
18	nsv1031516	chr4:151718614-152065644	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
19	nsv537304	chr4:151718614-152065644	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
20	nsv1022884	chr4:151718814-152065505	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
21	nsv537305	chr4:151718814-152065505	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
22	nsv880576	chr4:151751369-151936149	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
23	nsv595689	chr4:151788955-152015704	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
24	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
25	nsv1029464	chr4:151817148-151868929	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv881254	chr4:151829824-151936149	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
27	nsv880429	chr4:151844476-151936149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
28	nsv437442	chr4:151844930-151884313	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	nsv1026416	chr4:151847403-152105879	Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
30	nsv595691	chr4:151850524-151883290	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv2760836	chr4:151854949-151884310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv880862	chr4:151855250-151887280	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151796200-151872000	Weak transcription	Psoas Muscle	Psoas
2	chr4:151796400-151886600	Weak transcription	Pancreas	Pancrea
3	chr4:151806800-151860400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:151836000-151863400	Weak transcription	NHEK	skin
5	chr4:151836000-151865000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:151836200-151859800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:151836600-151860200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:151837800-151860200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:151840400-151860400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:151842200-151860200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:151846200-151860400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:151846400-151859800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:151846400-151866800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:151846400-151873800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:151846600-151859800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:151847600-151859800	Weak transcription	K562	blood
17	chr4:151847600-151860200	Weak transcription	Primary T cells from cord blood	blood
18	chr4:151849400-151878000	Weak transcription	Primary B cells from cord blood	blood
19	chr4:151850000-151861200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:151850200-151859800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:151850200-151860200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:151850200-151867400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:151850200-151873800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:151852200-151866000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:151858600-151860200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:151858600-151860400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:151858600-151870400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:151858800-151860200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:151859000-151860000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:151859000-151860600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:151859000-151861000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:151859200-151860000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:151859200-151861000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr4:151859200-151863400	Weak transcription	HUVEC	blood vessel
35	chr4:151859400-151859800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr4:151859400-151860000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr4:151859400-151860200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr4:151859400-151860200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:151859400-151860800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:151859400-151862000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr4:151859600-151859800	Enhancers	Aorta	Aorta
42	chr4:151859600-151859800	Enhancers	Stomach Mucosa	stomach
43	chr4:151859600-151859800	Enhancers	HMEC	breast
44	chr4:151859600-151860200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr4:151859600-151860200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr4:151859600-151860400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr4:151859600-151860400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:151859600-151860400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:151859600-151861000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr4:151859600-151861600	Enhancers	Fetal Thymus	thymus

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