Variant report

Variant	rs6535764
Chromosome Location	chr4:152038588-152038589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152032988..152035009-chr4:152038220..152039857,2	K562	blood:
2	chr4:152034164..152038818-chr4:152041361..152044945,5	K562	blood:
3	chr4:152038379..152040150-chr4:152040383..152042354,2	MCF-7	breast:
4	chr4:152038258..152038814-chr4:152197683..152198568,2	MCF-7	breast:
5	chr4:152038176..152040197-chr4:152045623..152047888,2	K562	blood:
6	chr4:152038573..152039512-chr4:152283907..152284485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109686	Chromatin interaction
ENSG00000189099	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10009307	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10020317	0.85[JPT][hapmap]
rs10434137	0.85[JPT][hapmap]
rs10520101	0.85[JPT][hapmap]
rs10520102	0.85[JPT][hapmap]
rs10776522	0.85[JPT][hapmap]
rs10857253	0.85[JPT][hapmap]
rs11733964	0.85[JPT][hapmap]
rs11734577	0.85[JPT][hapmap]
rs11934792	0.85[JPT][hapmap]
rs11940627	0.86[ASN][1000 genomes]
rs12501643	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12505974	0.85[JPT][hapmap]
rs12508270	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12512856	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs12644496	0.85[JPT][hapmap]
rs12647306	0.85[JPT][hapmap]
rs13101417	0.85[JPT][hapmap]
rs13141515	0.84[JPT][hapmap]
rs13145829	0.85[JPT][hapmap]
rs17633530	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17633600	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs1875308	1.00[CEU][hapmap]
rs2280280	0.83[JPT][hapmap]
rs2280283	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2407167	1.00[CEU][hapmap]
rs2407168	1.00[CEU][hapmap]
rs2407220	1.00[CEU][hapmap]
rs2407221	1.00[CEU][hapmap]
rs2407412	0.85[JPT][hapmap]
rs2407417	0.85[JPT][hapmap]
rs28593016	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28694456	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897659	0.85[JPT][hapmap]
rs3736502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762846	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792611	0.85[JPT][hapmap]
rs4266274	0.85[JPT][hapmap]
rs4696234	0.85[JPT][hapmap]
rs4696658	0.85[JPT][hapmap]
rs6535784	1.00[CEU][hapmap]
rs6846323	0.85[JPT][hapmap]
rs6847518	0.80[YRI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6850311	1.00[CEU][hapmap]
rs6858302	0.81[ASN][1000 genomes]
rs72963696	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7439970	0.83[JPT][hapmap]
rs7656771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7664483	0.85[JPT][hapmap]
rs7669180	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs7675432	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7691584	0.85[JPT][hapmap]
rs7699495	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1018404	chr4:151664438-152067409	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1017850	chr4:151664438-152071876	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	esv2763837	chr4:151664438-152071888	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv870257	chr4:151665349-152072867	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1015387	chr4:151673751-152071876	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv526976	chr4:151675819-152055073	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv949066	chr4:151693149-152069566	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv949002	chr4:151693149-152095109	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv1031720	chr4:151708502-152071876	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
15	nsv1031516	chr4:151718614-152065644	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv537304	chr4:151718614-152065644	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv1022884	chr4:151718814-152065505	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
18	nsv537305	chr4:151718814-152065505	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
19	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
20	nsv1026416	chr4:151847403-152105879	Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
21	nsv1018797	chr4:151913585-152073419	Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
22	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
23	nsv1016220	chr4:151997139-152164126	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
24	nsv537306	chr4:151997139-152164126	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152022800-152069800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:152023800-152041400	Strong transcription	Fetal Intestine Small	intestine
3	chr4:152025000-152073200	Weak transcription	Stomach Mucosa	stomach
4	chr4:152025200-152073600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:152025200-152085400	Weak transcription	Hela-S3	cervix
6	chr4:152025600-152042600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:152026200-152042200	Weak transcription	NHDF-Ad	bronchial
8	chr4:152027000-152086600	Weak transcription	Fetal Kidney	kidney
9	chr4:152027200-152050400	Weak transcription	Aorta	Aorta
10	chr4:152027200-152095600	Weak transcription	Pancreas	Pancrea
11	chr4:152027800-152042600	Weak transcription	Colonic Mucosa	Colon
12	chr4:152027800-152047200	Weak transcription	HSMMtube	muscle
13	chr4:152027800-152050800	Weak transcription	Spleen	Spleen
14	chr4:152027800-152065000	Weak transcription	Gastric	stomach
15	chr4:152028000-152047200	Weak transcription	Esophagus	oesophagus
16	chr4:152028600-152043600	Weak transcription	Small Intestine	intestine
17	chr4:152028600-152048600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:152028600-152065600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:152028800-152049000	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:152029200-152038800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:152029200-152040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:152029200-152041600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:152029200-152046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:152029200-152047200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:152029200-152048400	Weak transcription	HMEC	breast
26	chr4:152029200-152060800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:152029200-152065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:152029200-152070600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr4:152029400-152042600	Weak transcription	Placenta	Placenta
30	chr4:152029600-152041800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:152029600-152041800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:152029600-152042400	Weak transcription	Brain Anterior Caudate	brain
33	chr4:152031000-152039800	Weak transcription	HUVEC	blood vessel
34	chr4:152031800-152040800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:152031800-152048600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:152031800-152052800	Weak transcription	Fetal Brain Female	brain
37	chr4:152033000-152059000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:152033400-152045600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:152033600-152044600	Weak transcription	Lung	lung
40	chr4:152034200-152043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr4:152034200-152048400	Weak transcription	A549	lung
42	chr4:152034400-152038800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:152034400-152041000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:152034400-152041000	Weak transcription	Osteobl	bone
45	chr4:152034400-152042000	Weak transcription	Brain Germinal Matrix	brain
46	chr4:152034400-152046000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:152034600-152041800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr4:152034600-152042800	Weak transcription	NHEK	skin
49	chr4:152034800-152050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:152035000-152038800	Weak transcription	Fetal Thymus	thymus

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