Variant report
Variant | rs13101417 |
---|---|
Chromosome Location | chr4:152015776-152015777 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:21)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:21 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOXA1 | chr4:152015314-152015833 | HepG2 | liver: | n/a | n/a |
2 | FOXA1 | chr4:152015233-152015917 | HepG2 | liver: | n/a | n/a |
3 | MXI1 | chr4:152015432-152015811 | HepG2 | liver: | n/a | n/a |
4 | MAFK | chr4:152015360-152015801 | HepG2 | liver: | n/a | n/a |
5 | MYC | chr4:152015726-152015901 | MCF10A-Er-Src | breast: | n/a | n/a |
6 | MAFK | chr4:152015518-152015875 | HepG2 | liver: | n/a | n/a |
7 | HDAC2 | chr4:152015368-152015799 | HepG2 | liver: | n/a | n/a |
8 | SP1 | chr4:152015387-152015856 | HepG2 | liver: | n/a | n/a |
9 | FOXA2 | chr4:152015336-152015839 | HepG2 | liver: | n/a | n/a |
10 | SMC3 | chr4:152015554-152015786 | HepG2 | liver: | n/a | n/a |
11 | RCOR1 | chr4:152015380-152015797 | HepG2 | liver: | n/a | n/a |
12 | ARID3A | chr4:152015418-152015792 | HepG2 | liver: | n/a | n/a |
13 | MYBL2 | chr4:152015274-152015778 | HepG2 | liver: | n/a | n/a |
14 | FOXA1 | chr4:152015325-152015867 | HepG2 | liver: | n/a | n/a |
15 | CEBPB | chr4:152015399-152015861 | HepG2 | liver: | n/a | n/a |
16 | FOS | chr4:152015743-152015869 | MCF10A-Er-Src | breast: | n/a | n/a |
17 | MAX | chr4:152015280-152015852 | HepG2 | liver: | n/a | n/a |
18 | EP300 | chr4:152015408-152015783 | HepG2 | liver: | n/a | n/a |
19 | FOXA1 | chr4:152015360-152015846 | HepG2 | liver: | n/a | n/a |
20 | TEAD4 | chr4:152015180-152015834 | HepG2 | liver: | n/a | n/a |
21 | EP300 | chr4:152015277-152015850 | HepG2 | liver: | n/a | n/a |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:152014282..152017170-chr4:152018969..152021953,3 | K562 | blood: | |
2 | chr4:152013121..152019006-chr4:152019557..152023559,9 | MCF-7 | breast: | |
3 | chr4:152015597..152018658-chr4:152020547..152022666,3 | MCF-7 | breast: | |
4 | chr4:152014032..152016953-chr4:152019134..152021451,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RPS3A | TF binding region |
ENSG00000201264 | Chromatin interaction |
ENSG00000145425 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10020317 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10030785 | 0.83[GIH][hapmap] |
rs10434137 | 0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs10461253 | 0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs10520101 | 0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs10520102 | 0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs10776522 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs10857253 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10857254 | 0.86[GIH][hapmap] |
rs11099781 | 0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap] |
rs11733964 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11734577 | 0.86[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes] |
rs11734586 | 0.86[GIH][hapmap] |
rs11934792 | 0.80[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs11938266 | 0.86[GIH][hapmap] |
rs11938717 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12505974 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12508270 | 0.85[JPT][hapmap] |
rs12641297 | 0.94[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap] |
rs12644496 | 0.80[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap] |
rs12647306 | 0.80[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap] |
rs12648512 | 0.85[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rs13122245 | 0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13130167 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13141515 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
rs13145829 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1549512 | 0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[TSI][hapmap] |
rs17633530 | 0.85[JPT][hapmap] |
rs17633600 | 0.85[JPT][hapmap] |
rs2098927 | 0.89[CHB][hapmap];0.86[JPT][hapmap] |
rs2280280 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2280283 | 0.85[JPT][hapmap] |
rs2407406 | 0.86[GIH][hapmap] |
rs2407410 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2407412 | 0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs2407417 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
rs2407431 | 0.81[ASN][1000 genomes] |
rs2407438 | 0.83[AFR][1000 genomes];0.81[ASN][1000 genomes] |
rs2897657 | 0.86[GIH][hapmap] |
rs2897659 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3736502 | 0.85[JPT][hapmap] |
rs3792611 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4266274 | 0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap] |
rs4696226 | 0.89[GIH][hapmap] |
rs4696229 | 0.86[GIH][hapmap] |
rs4696234 | 0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap] |
rs4696235 | 0.86[GIH][hapmap] |
rs4696658 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4996333 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs62344632 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6535763 | 0.89[GIH][hapmap] |
rs6535764 | 0.85[JPT][hapmap] |
rs6816613 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6816651 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6818874 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6819599 | 0.89[GIH][hapmap] |
rs6826863 | 0.89[GIH][hapmap] |
rs6827056 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6832257 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6833991 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6846323 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6846981 | 0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6847597 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6847927 | 0.85[GIH][hapmap] |
rs7439970 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7656771 | 0.85[JPT][hapmap] |
rs7659146 | 0.86[GIH][hapmap] |
rs7664483 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7668154 | 0.86[GIH][hapmap] |
rs7669180 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7675597 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7690329 | 0.86[GIH][hapmap] |
rs7691584 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9994290 | 0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034948 | chr4:151590115-152202687 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv537302 | chr4:151590115-152202687 | ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
3 | nsv530159 | chr4:151624865-152203910 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
4 | nsv1018404 | chr4:151664438-152067409 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
5 | nsv1017850 | chr4:151664438-152071876 | Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
6 | esv2763837 | chr4:151664438-152071888 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
7 | nsv870257 | chr4:151665349-152072867 | Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
8 | nsv1015387 | chr4:151673751-152071876 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
9 | nsv526976 | chr4:151675819-152055073 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
10 | nsv1025077 | chr4:151682266-152035733 | Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
11 | nsv537303 | chr4:151682266-152035733 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
12 | nsv949066 | chr4:151693149-152069566 | Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
13 | nsv949002 | chr4:151693149-152095109 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
14 | nsv948719 | chr4:151693149-152161625 | Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
15 | nsv1031720 | chr4:151708502-152071876 | Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
16 | nsv880262 | chr4:151712054-152519899 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
17 | nsv1031516 | chr4:151718614-152065644 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
18 | nsv537304 | chr4:151718614-152065644 | Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
19 | nsv1022884 | chr4:151718814-152065505 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
20 | nsv537305 | chr4:151718814-152065505 | Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
21 | nsv595690 | chr4:151788955-152109552 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
22 | nsv1026416 | chr4:151847403-152105879 | Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
23 | nsv1018797 | chr4:151913585-152073419 | Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
24 | nsv881526 | chr4:151968295-152489087 | Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
25 | nsv968015 | chr4:151987982-152016879 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
26 | nsv1016220 | chr4:151997139-152164126 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
27 | nsv537306 | chr4:151997139-152164126 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:152005600-152019400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr4:152009400-152020000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
3 | chr4:152012000-152017200 | Enhancers | HepG2 | liver |
4 | chr4:152014400-152020000 | Weak transcription | Stomach Mucosa | stomach |
5 | chr4:152014400-152020400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
6 | chr4:152014600-152020000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
7 | chr4:152014600-152020000 | Weak transcription | Fetal Intestine Small | intestine |
8 | chr4:152015200-152016800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
9 | chr4:152015600-152020000 | Weak transcription | Fetal Intestine Large | intestine |