Variant report

Variant	rs3736502
Chromosome Location	chr4:152065197-152065198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10009307	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10020317	0.85[JPT][hapmap]
rs10434137	0.85[JPT][hapmap]
rs10520101	0.85[JPT][hapmap]
rs10520102	0.85[JPT][hapmap]
rs10776522	0.85[JPT][hapmap]
rs10857253	0.85[JPT][hapmap]
rs11733964	0.85[JPT][hapmap]
rs11734577	0.85[JPT][hapmap]
rs11934792	0.85[JPT][hapmap]
rs11940627	0.82[ASN][1000 genomes]
rs12501643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12505974	0.85[JPT][hapmap]
rs12508270	0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs12512856	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs12644496	0.85[JPT][hapmap]
rs12647306	0.85[JPT][hapmap]
rs13101417	0.85[JPT][hapmap]
rs13141515	0.84[JPT][hapmap]
rs13145829	0.85[JPT][hapmap]
rs17633530	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17633600	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1875308	1.00[CEU][hapmap]
rs2280280	0.83[JPT][hapmap]
rs2280283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407167	1.00[CEU][hapmap]
rs2407168	1.00[CEU][hapmap]
rs2407220	1.00[CEU][hapmap]
rs2407221	1.00[CEU][hapmap]
rs2407412	0.85[JPT][hapmap]
rs2407417	0.85[JPT][hapmap]
rs28593016	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28694456	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897659	0.85[JPT][hapmap]
rs36115072	0.81[ASN][1000 genomes]
rs3762846	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792611	0.85[JPT][hapmap]
rs4266274	0.85[JPT][hapmap]
rs4696234	0.85[JPT][hapmap]
rs4696658	0.85[JPT][hapmap]
rs6535764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535784	1.00[CEU][hapmap]
rs6846323	0.85[JPT][hapmap]
rs6847518	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6850311	1.00[CEU][hapmap]
rs6858302	0.83[ASN][1000 genomes]
rs72963696	0.82[ASN][1000 genomes]
rs7439970	0.83[JPT][hapmap]
rs7656771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7664483	0.85[JPT][hapmap]
rs7669180	0.85[JPT][hapmap]
rs7675432	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7681571	0.81[ASN][1000 genomes]
rs7682480	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691584	0.85[JPT][hapmap]
rs7699495	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1018404	chr4:151664438-152067409	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1017850	chr4:151664438-152071876	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	esv2763837	chr4:151664438-152071888	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv870257	chr4:151665349-152072867	Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1015387	chr4:151673751-152071876	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv949066	chr4:151693149-152069566	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv949002	chr4:151693149-152095109	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv1031720	chr4:151708502-152071876	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
14	nsv1031516	chr4:151718614-152065644	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
15	nsv537304	chr4:151718614-152065644	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv1022884	chr4:151718814-152065505	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
17	nsv537305	chr4:151718814-152065505	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
18	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
19	nsv1026416	chr4:151847403-152105879	Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
20	nsv1018797	chr4:151913585-152073419	Flanking Active TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
21	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
22	nsv1016220	chr4:151997139-152164126	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
23	nsv537306	chr4:151997139-152164126	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736502	RPS3A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152022800-152069800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:152025000-152073200	Weak transcription	Stomach Mucosa	stomach
3	chr4:152025200-152073600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:152025200-152085400	Weak transcription	Hela-S3	cervix
5	chr4:152027000-152086600	Weak transcription	Fetal Kidney	kidney
6	chr4:152027200-152095600	Weak transcription	Pancreas	Pancrea
7	chr4:152028600-152065600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:152029200-152065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:152029200-152070600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:152035600-152072400	Weak transcription	Fetal Brain Male	brain
11	chr4:152040200-152065800	Strong transcription	Adipose Nuclei	Adipose
12	chr4:152040400-152067200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:152040400-152073800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:152043400-152095800	Weak transcription	Placenta	Placenta
15	chr4:152046000-152067200	Strong transcription	Fetal Intestine Large	intestine
16	chr4:152046200-152072400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr4:152047400-152087800	Weak transcription	Psoas Muscle	Psoas
18	chr4:152049600-152065400	Weak transcription	Colonic Mucosa	Colon
19	chr4:152050600-152087000	Weak transcription	HSMMtube	muscle
20	chr4:152051000-152065600	Weak transcription	Esophagus	oesophagus
21	chr4:152051400-152071200	Weak transcription	Brain Angular Gyrus	brain
22	chr4:152051600-152071600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr4:152051600-152087200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:152052000-152066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:152053400-152067200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr4:152055000-152105800	Weak transcription	Small Intestine	intestine
27	chr4:152058000-152069800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:152058200-152066800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:152058200-152070600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr4:152058400-152066400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:152059200-152065800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:152059200-152087000	Weak transcription	Fetal Heart	heart
33	chr4:152059400-152074800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:152059600-152065600	Strong transcription	Left Ventricle	heart
35	chr4:152059600-152066800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:152059600-152071000	Strong transcription	Fetal Stomach	stomach
37	chr4:152059600-152072400	Strong transcription	Fetal Intestine Small	intestine
38	chr4:152059800-152066000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:152060000-152069400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr4:152060600-152066600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:152060600-152067000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:152060600-152067200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr4:152060600-152070800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:152060800-152065200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:152060800-152066200	Strong transcription	Colon Smooth Muscle	Colon
46	chr4:152060800-152067200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:152060800-152069600	Strong transcription	HSMM	muscle
48	chr4:152061200-152065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr4:152061200-152068200	Weak transcription	Right Ventricle	heart
50	chr4:152061400-152066600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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