Variant report

Variant	rs28540258
Chromosome Location	chr4:151550668-151550669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151549998..151552688-chr4:151555046..151558009,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10003085	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10004115	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10017937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10021640	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10026518	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10028040	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10034965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12500679	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12505123	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12507269	0.83[AMR][1000 genomes]
rs1289963	0.82[EUR][1000 genomes]
rs13340305	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17026968	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17026978	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17027065	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17027116	0.86[EUR][1000 genomes]
rs1966844	0.82[EUR][1000 genomes]
rs28367335	0.82[ASN][1000 genomes]
rs28379788	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28405183	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28447376	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28501240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28521457	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28539520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28544421	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28558492	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28572569	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28591543	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28627398	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28630451	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28641948	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28797934	0.81[ASN][1000 genomes]
rs28802622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294528	0.82[EUR][1000 genomes]
rs3922785	0.80[ASN][1000 genomes]
rs4260528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57790879	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59515357	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61069335	0.83[ASN][1000 genomes]
rs61655905	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6849364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858706	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72959804	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7655913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691319	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7691594	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7699621	0.80[ASN][1000 genomes]
rs9884732	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9968356	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv880261	chr4:151521933-151588483	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151501200-151559800	Weak transcription	Ovary	ovary
3	chr4:151512400-151556000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:151512800-151550800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:151520400-151556200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:151520600-151553800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:151531000-151553600	Weak transcription	Primary B cells from cord blood	blood
8	chr4:151533400-151553800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:151533400-151596200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:151537600-151559600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:151541600-151557800	Weak transcription	Pancreas	Pancrea
12	chr4:151542000-151554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:151543600-151553800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:151543800-151554600	Weak transcription	Primary T cells from cord blood	blood

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