Variant report

Variant	rs57925391
Chromosome Location	chr4:151306555-151306556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151299346..151301493-chr4:151304266..151307091,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10007294	1.00[EUR][1000 genomes]
rs10021676	0.90[EUR][1000 genomes]
rs10021938	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10022107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10471055	0.90[EUR][1000 genomes]
rs12499251	0.87[EUR][1000 genomes]
rs12499400	0.87[EUR][1000 genomes]
rs12503255	1.00[EUR][1000 genomes]
rs12511109	0.90[EUR][1000 genomes]
rs12512965	1.00[EUR][1000 genomes]
rs13434795	1.00[EUR][1000 genomes]
rs1504782	0.90[EUR][1000 genomes]
rs17632340	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28373995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416574	0.99[ASN][1000 genomes]
rs28446645	0.90[EUR][1000 genomes]
rs28456277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460294	0.90[EUR][1000 genomes]
rs28490505	0.86[EUR][1000 genomes]
rs28573941	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28587623	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28623363	0.87[EUR][1000 genomes]
rs28680477	1.00[EUR][1000 genomes]
rs61520262	0.90[EUR][1000 genomes]
rs6848342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953804	1.00[EUR][1000 genomes]
rs72955819	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7664323	0.90[EUR][1000 genomes]
rs9307872	0.87[EUR][1000 genomes]
rs9307873	0.87[EUR][1000 genomes]
rs9307875	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9992387	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
3	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:151290200-151367400	Weak transcription	K562	blood
6	chr4:151291800-151314200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr4:151292400-151306800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:151292400-151361000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:151293600-151307200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:151294200-151314000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:151296000-151317200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:151297200-151306800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:151297200-151314000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:151298600-151306600	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:151299800-151314600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:151301200-151306600	Weak transcription	NH-A	brain
17	chr4:151301600-151306800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:151301600-151315600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:151302400-151307200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:151303200-151306600	Weak transcription	NHLF	lung
21	chr4:151303400-151306600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:151303400-151306800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:151303600-151306600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:151303800-151306600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:151304800-151307400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr4:151305000-151307400	Enhancers	Osteobl	bone
27	chr4:151305400-151307000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:151305400-151307400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:151305400-151307400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:151305400-151307400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:151305400-151307600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:151305400-151307600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:151305600-151307000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:151305600-151307200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:151306000-151306600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:151306000-151306800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:151306400-151307000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr4:151306400-151307200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:151306400-151307400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr4:151306400-151307400	Enhancers	NHDF-Ad	bronchial

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