Variant report

Variant	rs28360921
Chromosome Location	chr4:87056245-87056246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001480	0.90[ASN][1000 genomes]
rs10006261	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12505595	0.90[ASN][1000 genomes]
rs12647176	0.90[ASN][1000 genomes]
rs12647506	0.90[ASN][1000 genomes]
rs12650286	0.90[ASN][1000 genomes]
rs28394598	0.87[ASN][1000 genomes]
rs28399149	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28435171	0.90[ASN][1000 genomes]
rs28552906	0.90[ASN][1000 genomes]
rs28594219	0.90[ASN][1000 genomes]
rs28625279	0.90[ASN][1000 genomes]
rs28639372	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28684379	0.90[ASN][1000 genomes]
rs28846216	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4560400	0.88[ASN][1000 genomes]
rs4613557	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4693136	0.90[ASN][1000 genomes]
rs4693755	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4693756	0.90[ASN][1000 genomes]
rs4693757	0.90[ASN][1000 genomes]
rs6846365	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6854208	0.90[ASN][1000 genomes]
rs72662045	0.90[ASN][1000 genomes]
rs72662049	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72662050	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72662056	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72662065	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7692508	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87035800-87077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:87049000-87061800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:87051000-87070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:87052000-87114200	Weak transcription	Ovary	ovary
5	chr4:87055600-87056600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr4:87056000-87056400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:87056200-87056400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:87056200-87056400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:87056200-87056400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr4:87056200-87056400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:87056200-87056600	Active TSS	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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