Variant report

Variant	rs28361472
Chromosome Location	chr15:55413208-55413209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10518799	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12385965	0.83[EUR][1000 genomes]
rs16976006	0.93[EUR][1000 genomes]
rs16976036	0.80[EUR][1000 genomes]
rs16976039	0.80[EUR][1000 genomes]
rs16976065	0.80[EUR][1000 genomes]
rs16976083	0.80[EUR][1000 genomes]
rs1865475	0.86[EUR][1000 genomes]
rs28417136	0.91[EUR][1000 genomes]
rs28517668	0.87[EUR][1000 genomes]
rs28551049	0.86[EUR][1000 genomes]
rs28572587	0.91[EUR][1000 genomes]
rs28635519	0.85[EUR][1000 genomes]
rs28694196	0.91[EUR][1000 genomes]
rs496232	0.91[EUR][1000 genomes]
rs501639	0.86[EUR][1000 genomes]
rs501898	0.85[EUR][1000 genomes]
rs527015	0.88[EUR][1000 genomes]
rs528628	0.86[EUR][1000 genomes]
rs554383	0.86[EUR][1000 genomes]
rs561001	0.86[EUR][1000 genomes]
rs561702	0.91[EUR][1000 genomes]
rs564740	0.88[EUR][1000 genomes]
rs62020096	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6493749	0.90[EUR][1000 genomes]
rs7167792	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55405200-55416800	Weak transcription	Fetal Lung	lung
2	chr15:55413000-55413400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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