Variant report

Variant	rs16976006
Chromosome Location	chr15:55443901-55443902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55441978..55444770-chr15:55453903..55455710,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10518799	0.85[EUR][1000 genomes]
rs12385965	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16976036	0.84[ASW][hapmap];0.88[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16976039	0.88[CEU][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16976065	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16976083	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1865475	0.83[EUR][1000 genomes]
rs2289059	0.82[ASW][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap]
rs28361472	0.93[EUR][1000 genomes]
rs28417136	0.85[EUR][1000 genomes]
rs28517668	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28572587	0.85[EUR][1000 genomes]
rs28694196	0.85[EUR][1000 genomes]
rs4238316	0.83[EUR][1000 genomes]
rs496232	0.85[EUR][1000 genomes]
rs501639	0.83[EUR][1000 genomes]
rs501898	0.81[EUR][1000 genomes]
rs527015	0.82[EUR][1000 genomes]
rs528628	0.83[EUR][1000 genomes]
rs554383	0.83[EUR][1000 genomes]
rs561001	0.83[EUR][1000 genomes]
rs561702	0.85[EUR][1000 genomes]
rs564740	0.82[EUR][1000 genomes]
rs62020096	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6493749	0.83[EUR][1000 genomes]
rs6493767	0.81[TSI][hapmap]
rs7167792	0.83[EUR][1000 genomes]
rs7180504	0.82[ASW][hapmap];0.90[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55442400-55445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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