Variant report

Variant	rs28362949
Chromosome Location	chr11:57371911-57371912
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:57371777-57372136	NB4	blood:	n/a	n/a
2	TCF12	chr11:57371835-57372021	GM12878	blood:	n/a	n/a
3	MYC	chr11:57371785-57372111	NB4	blood:	n/a	n/a

Variant related genes	Relation type
SERPING1	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10750866	0.82[ASN][1000 genomes]
rs10896631	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896632	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229063	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229066	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229067	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229075	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229077	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229078	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229080	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11603020	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606677	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11606706	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607122	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11820040	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1647395	0.82[ASN][1000 genomes]
rs2081361	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28362934	0.93[ASN][1000 genomes]
rs28362947	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362948	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362950	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362951	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34052104	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758918	0.93[ASN][1000 genomes]
rs3758919	0.93[ASN][1000 genomes]
rs3824988	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55649513	0.82[ASN][1000 genomes]
rs55920079	0.82[ASN][1000 genomes]
rs7102271	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7117878	0.88[AFR][1000 genomes]
rs7117896	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs731384	0.86[AFR][1000 genomes]
rs73480556	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv897588	chr11:57364381-57373478	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57366200-57379000	Weak transcription	Gastric	stomach
2	chr11:57366400-57373200	Weak transcription	Spleen	Spleen
3	chr11:57366400-57381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:57366400-57385800	Weak transcription	Esophagus	oesophagus
5	chr11:57366600-57373200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:57366600-57378800	Weak transcription	Colonic Mucosa	Colon
7	chr11:57366600-57382600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:57366600-57384400	Weak transcription	Pancreas	Pancrea
9	chr11:57366800-57373200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:57366800-57373800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:57366800-57380800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:57366800-57381600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:57366800-57381600	Weak transcription	Osteobl	bone
14	chr11:57366800-57386600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:57366800-57388800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:57367000-57373200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:57367000-57373400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:57367000-57387400	Weak transcription	NHDF-Ad	bronchial
19	chr11:57367200-57372000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:57367200-57373200	Weak transcription	Fetal Brain Female	brain
21	chr11:57367200-57373200	Weak transcription	NHLF	lung
22	chr11:57367200-57373400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:57367200-57373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:57367200-57373400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:57367200-57373800	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:57367200-57378800	Weak transcription	Right Ventricle	heart
27	chr11:57367200-57379200	Weak transcription	Fetal Intestine Large	intestine
28	chr11:57367200-57380600	Weak transcription	Fetal Brain Male	brain
29	chr11:57367200-57380600	Weak transcription	Fetal Kidney	kidney
30	chr11:57367400-57373000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:57367400-57373200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:57367400-57373400	Weak transcription	Brain Germinal Matrix	brain
33	chr11:57367400-57373600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:57367400-57377400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:57367400-57381600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:57368000-57372600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:57368000-57373000	Weak transcription	Ovary	ovary
38	chr11:57368000-57373200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:57368000-57373200	Weak transcription	Aorta	Aorta
40	chr11:57368000-57373200	Weak transcription	Fetal Intestine Small	intestine
41	chr11:57368000-57373200	Weak transcription	Left Ventricle	heart
42	chr11:57368200-57373400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:57368200-57373400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:57368800-57373400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:57369000-57373400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:57369000-57385200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:57369800-57372800	Strong transcription	Liver	Liver
48	chr11:57369800-57372800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:57369800-57373200	Weak transcription	Lung	lung
50	chr11:57369800-57373200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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