Variant report

Variant	rs3758918
Chromosome Location	chr11:57363761-57363762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:57363688-57363837	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAFF	chr11:57363684-57363956	HepG2	liver:	n/a	chr11:57363827-57363845
3	MAFK	chr11:57363678-57363951	HepG2	liver:	n/a	chr11:57363828-57363843

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57363269..57366608-chr11:57366625..57370345,5	K562	blood:
2	chr11:57280138..57282809-chr11:57363760..57366213,2	MCF-7	breast:

Variant related genes	Relation type
SERPING1	TF binding region
ENSG00000149150	Chromatin interaction
ENSG00000149131	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10896631	0.89[ASN][1000 genomes]
rs10896632	0.89[ASN][1000 genomes]
rs11229063	0.93[ASN][1000 genomes]
rs11229066	0.93[ASN][1000 genomes]
rs11229067	0.93[ASN][1000 genomes]
rs11229075	0.89[ASN][1000 genomes]
rs11229077	0.86[ASN][1000 genomes]
rs11229078	0.86[ASN][1000 genomes]
rs11229080	0.86[ASN][1000 genomes]
rs11603020	0.93[ASN][1000 genomes]
rs11606677	0.89[ASN][1000 genomes]
rs11606706	0.89[ASN][1000 genomes]
rs11820040	0.93[ASN][1000 genomes]
rs28362934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28362947	0.93[ASN][1000 genomes]
rs28362948	0.93[ASN][1000 genomes]
rs28362949	0.93[ASN][1000 genomes]
rs28362950	0.93[ASN][1000 genomes]
rs28362951	0.93[ASN][1000 genomes]
rs34052104	0.89[ASN][1000 genomes]
rs3758919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824988	0.93[ASN][1000 genomes]
rs4926	0.89[ASN][1000 genomes]
rs7102271	0.85[ASN][1000 genomes]
rs7117896	0.88[ASN][1000 genomes]
rs73480556	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57358600-57365000	Weak transcription	Pancreas	Pancrea
2	chr11:57360400-57364000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:57360600-57364000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:57360600-57364600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:57361000-57364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:57361000-57364000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:57362400-57364000	Weak transcription	Lung	lung
8	chr11:57362400-57364600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:57362400-57364600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:57362600-57364600	Enhancers	Fetal Muscle Leg	muscle
11	chr11:57362800-57364000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:57362800-57364400	Enhancers	Liver	Liver
13	chr11:57363000-57364600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:57363000-57365400	Weak transcription	Fetal Thymus	thymus
15	chr11:57363200-57365000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:57363400-57364000	Enhancers	HepG2	liver
17	chr11:57363400-57364400	Weak transcription	Fetal Kidney	kidney
18	chr11:57363400-57364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:57363400-57364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:57363600-57363800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr11:57363600-57364600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links