Variant report

Variant	rs28363530
Chromosome Location	chr1:171069088-171069089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr1:171068802-171069165	A549	lung:	n/a	n/a

Variant related genes	Relation type
FMO3	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1080197	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10910879	0.81[AMR][1000 genomes]
rs11809504	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11812044	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11812061	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12402295	0.81[AMR][1000 genomes]
rs12403297	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12404455	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12405599	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12406572	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17564980	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17565336	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17565579	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17565766	0.94[EUR][1000 genomes]
rs17565793	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17565983	0.82[AMR][1000 genomes]
rs17565990	0.89[AMR][1000 genomes]
rs17623477	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2066529	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2266780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2281006	0.82[EUR][1000 genomes]
rs2281007	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2281008	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28363536	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28363537	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28363541	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28363571	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28745585	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28745586	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28745588	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35156637	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55639094	0.82[AMR][1000 genomes]
rs6608452	0.94[EUR][1000 genomes]
rs6608453	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6608454	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7051747	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7054839	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7061710	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7063044	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7066454	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72712649	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72712658	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72712685	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7879557	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7889807	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs909531	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171068800-171069200	Strong transcription	Liver	Liver

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