Variant report

Variant	rs28745585
Chromosome Location	chr1:171063590-171063591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1080197	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10910879	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11809504	0.82[AMR][1000 genomes]
rs12059956	0.81[ASN][1000 genomes]
rs12402295	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12403297	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12404455	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12405599	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17564980	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17565990	0.82[AMR][1000 genomes]
rs2066529	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2266780	0.82[AMR][1000 genomes]
rs28363530	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28363536	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28363537	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28363541	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28363571	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28745586	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28745588	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712649	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171062600-171064000	Active TSS	Liver	Liver

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