Variant report

Variant	rs2836633
Chromosome Location	chr21:40067445-40067446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11088437	0.90[EUR][1000 genomes]
rs11700673	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2212606	0.80[EUR][1000 genomes]
rs2836615	0.82[EUR][1000 genomes]
rs2836621	0.90[EUR][1000 genomes]
rs2836631	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836635	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8130434	0.84[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2836633	SETD4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40060000-40073200	Weak transcription	Aorta	Aorta
3	chr21:40067200-40067600	Enhancers	Fetal Brain Male	brain
4	chr21:40067400-40067800	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links