Variant report

Variant	rs28368237
Chromosome Location	chr4:174263559-174263560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17059272	1.00[AMR][1000 genomes]
rs59212575	1.00[AMR][1000 genomes]
rs6833097	1.00[AMR][1000 genomes]
rs73001558	1.00[AMR][1000 genomes]
rs73003339	1.00[AMR][1000 genomes]
rs73003345	1.00[AMR][1000 genomes]
rs73005344	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73005350	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73005351	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73005358	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73005359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7658147	1.00[AMR][1000 genomes]
rs7681398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7682997	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7689758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174257000-174264400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:174257000-174264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:174257200-174264400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:174258000-174264400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:174259200-174264400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:174259200-174266400	Weak transcription	HSMM	muscle
8	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
9	chr4:174262400-174264200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:174262600-174264400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:174262600-174264800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:174262800-174264400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:174262800-174264800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:174263000-174264600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:174263000-174264600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links