Variant report

Variant	rs73001558
Chromosome Location	chr4:174205378-174205379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17059268	0.96[ASN][1000 genomes]
rs17059272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059281	0.96[ASN][1000 genomes]
rs28368237	1.00[AMR][1000 genomes]
rs28699371	0.92[ASN][1000 genomes]
rs55661507	0.88[ASN][1000 genomes]
rs57410315	0.84[ASN][1000 genomes]
rs57476920	0.84[ASN][1000 genomes]
rs57572680	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59212575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59926654	0.96[ASN][1000 genomes]
rs60050553	0.92[ASN][1000 genomes]
rs60612649	0.84[ASN][1000 genomes]
rs6833097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6834063	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6839839	0.92[ASN][1000 genomes]
rs72999528	0.88[ASN][1000 genomes]
rs72999537	0.84[ASN][1000 genomes]
rs72999541	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73001514	0.92[ASN][1000 genomes]
rs73001532	0.92[ASN][1000 genomes]
rs73001537	0.92[ASN][1000 genomes]
rs73001546	0.96[ASN][1000 genomes]
rs73003339	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73003345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73005344	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73005350	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73005351	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73005358	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73005359	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7658147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7681398	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7682997	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7689758	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
2	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:174186600-174207000	Weak transcription	Ovary	ovary
4	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
5	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:174194600-174205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:174195200-174206200	Weak transcription	Fetal Lung	lung
8	chr4:174195200-174207600	Weak transcription	Stomach Mucosa	stomach
9	chr4:174196800-174210000	Weak transcription	Gastric	stomach
10	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:174202800-174205600	Weak transcription	Dnd41	blood
12	chr4:174202800-174207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:174203000-174206600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:174203000-174208600	Weak transcription	Aorta	Aorta
15	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
16	chr4:174203600-174207200	Weak transcription	GM12878-XiMat	blood
17	chr4:174203800-174205400	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:174204600-174209000	ZNF genes & repeats	Thymus	Thymus
19	chr4:174204800-174205800	ZNF genes & repeats	Fetal Thymus	thymus
20	chr4:174204800-174209000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr4:174204800-174209200	ZNF genes & repeats	K562	blood
22	chr4:174205000-174209000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr4:174205000-174209200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr4:174205200-174209000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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