Variant report

Variant	rs60050553
Chromosome Location	chr4:174185586-174185587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr4:174185269-174186192	K562	blood:	n/a	n/a
2	ELF1	chr4:174185469-174185741	K562	blood:	n/a	chr4:174185628-174185641
3	RUNX3	chr4:174185572-174186207	GM12878	blood:	n/a	n/a
4	ZNF274	chr4:174185317-174186049	K562	blood:	n/a	n/a
5	TRIM28	chr4:174185382-174186166	K562	blood:	n/a	n/a
6	ARID3A	chr4:174185423-174186146	K562	blood:	n/a	n/a
7	TEAD4	chr4:174185409-174186267	K562	blood:	n/a	n/a
8	RCOR1	chr4:174185517-174186293	K562	blood:	n/a	n/a
9	NR2F2	chr4:174185481-174186233	K562	blood:	n/a	n/a
10	ZNF143	chr4:174185418-174185593	K562	blood:	n/a	n/a
11	TBL1XR1	chr4:174185540-174186122	K562	blood:	n/a	n/a
12	GATA1	chr4:174185236-174186422	PBDE	blood:	n/a	n/a
13	KAP1	chr4:174185186-174185953	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174184488..174187723-chr4:174190497..174194400,3	K562	blood:
2	chr4:174183927..174186318-chr4:174195648..174197526,2	K562	blood:
3	chr4:174183251..174185605-chr4:174201544..174203749,2	K562	blood:
4	chr4:174137352..174140088-chr4:174184722..174187553,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-2	chr4:174185479-174185665	ENSG00000249097

No data

Variant related genes	Relation type
MIR548T	TF binding region
ENSG00000109586	Chromatin interaction

rs_ID	r²[population]
rs17059268	0.96[ASN][1000 genomes]
rs17059272	0.92[ASN][1000 genomes]
rs17059281	0.88[ASN][1000 genomes]
rs28699371	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55661507	0.96[ASN][1000 genomes]
rs57130388	0.87[ASN][1000 genomes]
rs57410315	0.92[ASN][1000 genomes]
rs57476920	0.91[ASN][1000 genomes]
rs57572680	0.96[ASN][1000 genomes]
rs57715340	0.87[ASN][1000 genomes]
rs59212575	0.92[ASN][1000 genomes]
rs59926654	0.96[ASN][1000 genomes]
rs60388714	0.87[ASN][1000 genomes]
rs60612649	0.92[ASN][1000 genomes]
rs60699343	0.87[ASN][1000 genomes]
rs6833097	0.92[ASN][1000 genomes]
rs6834063	0.96[ASN][1000 genomes]
rs6839839	0.92[ASN][1000 genomes]
rs72993766	0.87[ASN][1000 genomes]
rs72993775	0.87[ASN][1000 genomes]
rs72993786	0.87[ASN][1000 genomes]
rs72993793	0.87[ASN][1000 genomes]
rs72994583	0.87[ASN][1000 genomes]
rs72994586	0.87[ASN][1000 genomes]
rs72994588	0.87[ASN][1000 genomes]
rs72995610	0.87[ASN][1000 genomes]
rs72995612	0.87[ASN][1000 genomes]
rs72999528	0.96[ASN][1000 genomes]
rs72999537	0.92[ASN][1000 genomes]
rs72999541	0.96[ASN][1000 genomes]
rs73001514	0.92[ASN][1000 genomes]
rs73001532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73001537	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73001546	0.96[ASN][1000 genomes]
rs73001558	0.92[ASN][1000 genomes]
rs73003339	0.92[ASN][1000 genomes]
rs73003345	0.92[ASN][1000 genomes]
rs73005344	0.84[ASN][1000 genomes]
rs73005350	0.84[ASN][1000 genomes]
rs73005351	0.84[ASN][1000 genomes]
rs73005358	0.84[ASN][1000 genomes]
rs73005359	0.84[ASN][1000 genomes]
rs7658147	0.92[ASN][1000 genomes]
rs7681398	0.84[ASN][1000 genomes]
rs7682997	0.84[ASN][1000 genomes]
rs7689758	0.84[ASN][1000 genomes]

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:174164000-174185600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:174164000-174185800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:174164000-174186000	Weak transcription	Aorta	Aorta
6	chr4:174168600-174185800	Weak transcription	Brain Germinal Matrix	brain
7	chr4:174169600-174185600	Weak transcription	Fetal Stomach	stomach
8	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:174173600-174185600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:174173600-174186000	Weak transcription	Esophagus	oesophagus
11	chr4:174173600-174190400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:174174200-174185600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:174179000-174186000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:174179000-174191600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:174179600-174186000	Weak transcription	Right Atrium	heart
19	chr4:174180400-174186000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:174182400-174185600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:174183000-174186000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:174183200-174186600	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:174183600-174185600	Enhancers	Primary B cells from cord blood	blood
24	chr4:174183600-174185600	Enhancers	Primary hematopoietic stem cells	blood
25	chr4:174184400-174185600	Active TSS	Thymus	Thymus
26	chr4:174184600-174185600	Active TSS	Fetal Thymus	thymus
27	chr4:174184600-174186200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:174184600-174186600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:174184600-174186600	Flanking Active TSS	Dnd41	blood
30	chr4:174184600-174186800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr4:174184800-174186400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:174184800-174186600	Enhancers	Duodenum Mucosa	Duodenum
33	chr4:174184800-174186800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr4:174185000-174186400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:174185000-174186400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr4:174185000-174186400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr4:174185000-174186600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr4:174185200-174185600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:174185200-174186000	Flanking Active TSS	K562	blood
40	chr4:174185200-174186200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr4:174185200-174186200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr4:174185200-174186400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:174185200-174186600	Enhancers	Fetal Lung	lung
44	chr4:174185400-174185600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:174185400-174185600	Enhancers	HSMMtube	muscle
46	chr4:174185400-174185800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:174185400-174185800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr4:174185400-174186000	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr4:174185400-174186200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr4:174185400-174186200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links