Variant report

Variant	rs6839839
Chromosome Location	chr4:174179493-174179494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174072728..174075082-chr4:174179224..174181995,2	K562	blood:
2	chr4:174178135..174180724-chr4:174181487..174183012,2	K562	blood:
3	chr4:173940735..173943475-chr4:174177350..174179686,2	MCF-7	breast:
4	chr4:173946014..173946590-chr4:174178701..174179520,2	MCF-7	breast:
5	chr4:173945930..173946904-chr4:174178621..174179494,5	MCF-7	breast:
6	chr4:173946138..173947087-chr4:174178618..174179507,4	K562	blood:
7	chr4:173934352..173935185-chr4:174178993..174179502,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11932721	0.86[JPT][hapmap]
rs11942280	0.86[JPT][hapmap]
rs17059255	0.86[JPT][hapmap]
rs17059268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17059272	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17059281	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28699371	0.92[ASN][1000 genomes]
rs55661507	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57130388	0.88[ASN][1000 genomes]
rs57410315	0.92[ASN][1000 genomes]
rs57476920	0.92[ASN][1000 genomes]
rs57572680	0.96[ASN][1000 genomes]
rs57715340	0.88[ASN][1000 genomes]
rs59212575	0.92[ASN][1000 genomes]
rs59926654	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60050553	0.92[ASN][1000 genomes]
rs60388714	0.88[ASN][1000 genomes]
rs60612649	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60699343	0.88[ASN][1000 genomes]
rs6553687	0.86[JPT][hapmap]
rs6833097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6834063	0.96[ASN][1000 genomes]
rs6840087	0.86[JPT][hapmap]
rs72993766	0.88[ASN][1000 genomes]
rs72993775	0.88[ASN][1000 genomes]
rs72993786	0.88[ASN][1000 genomes]
rs72993793	0.88[ASN][1000 genomes]
rs72994583	0.88[ASN][1000 genomes]
rs72994586	0.88[ASN][1000 genomes]
rs72994588	0.88[ASN][1000 genomes]
rs72995610	0.88[ASN][1000 genomes]
rs72995612	0.88[ASN][1000 genomes]
rs72999528	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72999537	0.92[ASN][1000 genomes]
rs72999541	0.96[ASN][1000 genomes]
rs73001514	0.92[ASN][1000 genomes]
rs73001532	0.92[ASN][1000 genomes]
rs73001537	0.92[ASN][1000 genomes]
rs73001546	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73001558	0.92[ASN][1000 genomes]
rs73003339	0.92[ASN][1000 genomes]
rs73003345	0.92[ASN][1000 genomes]
rs73005344	0.84[ASN][1000 genomes]
rs73005350	0.84[ASN][1000 genomes]
rs73005351	0.84[ASN][1000 genomes]
rs73005358	0.84[ASN][1000 genomes]
rs73005359	0.84[ASN][1000 genomes]
rs7658147	0.92[ASN][1000 genomes]
rs7681398	0.84[ASN][1000 genomes]
rs7682997	0.84[ASN][1000 genomes]
rs7689758	0.84[ASN][1000 genomes]
rs934358	0.86[JPT][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:174163800-174184600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:174164000-174185600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:174164000-174185800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:174164000-174186000	Weak transcription	Aorta	Aorta
7	chr4:174164200-174185400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:174165600-174182200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:174168600-174185800	Weak transcription	Brain Germinal Matrix	brain
10	chr4:174169400-174185400	Weak transcription	Fetal Intestine Large	intestine
11	chr4:174169600-174185600	Weak transcription	Fetal Stomach	stomach
12	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:174172000-174183400	Weak transcription	Primary T cells from cord blood	blood
14	chr4:174172200-174185400	Weak transcription	Fetal Intestine Small	intestine
15	chr4:174173600-174185400	Weak transcription	Brain Angular Gyrus	brain
16	chr4:174173600-174185600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:174173600-174186000	Weak transcription	Esophagus	oesophagus
18	chr4:174173600-174190400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:174173800-174184800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:174173800-174185400	Weak transcription	Brain Anterior Caudate	brain
22	chr4:174174200-174185400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:174174200-174185600	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:174174400-174185400	Weak transcription	HSMMtube	muscle
25	chr4:174174600-174182200	Weak transcription	Stomach Mucosa	stomach
26	chr4:174174600-174185400	Weak transcription	HUVEC	blood vessel
27	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:174175000-174185000	Weak transcription	HSMM	muscle
29	chr4:174176200-174182800	Genic enhancers	Fetal Thymus	thymus
30	chr4:174176400-174179600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr4:174176600-174184600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:174176800-174179600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:174177000-174179800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:174177200-174184800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:174178400-174182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:174178800-174179600	Enhancers	Primary hematopoietic stem cells	blood
38	chr4:174178800-174179600	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr4:174178800-174179600	Enhancers	A549	lung
40	chr4:174178800-174180000	Enhancers	GM12878-XiMat	blood
41	chr4:174178800-174180200	Enhancers	K562	blood
42	chr4:174178800-174185200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:174179000-174185400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:174179000-174186000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr4:174179000-174191600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:174179200-174179600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:174179200-174180400	Strong transcription	Dnd41	blood
48	chr4:174179400-174179600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:174179400-174179600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:174179400-174179600	Flanking Active TSS	Thymus	Thymus

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