The 2.0 version of rSNPBase

Variant report

Variant rs73001546
Chromosome Location chr4:174203542-174203543
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:174159200-174204600 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr4:174186400-174208600 Weak transcription Esophagus oesophagus
3 chr4:174186600-174206800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr4:174186600-174207000 Weak transcription Ovary ovary
5 chr4:174186600-174207000 Weak transcription Small Intestine intestine
6 chr4:174186600-174209800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr4:174186800-174203600 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr4:174191800-174204600 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr4:174191800-174205000 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr4:174192200-174205000 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr4:174194600-174205600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr4:174195200-174206200 Weak transcription Fetal Lung lung
13 chr4:174195200-174207600 Weak transcription Stomach Mucosa stomach
14 chr4:174196600-174204400 Weak transcription Lung lung
15 chr4:174196800-174203800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr4:174196800-174210000 Weak transcription Gastric stomach
17 chr4:174201600-174204000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr4:174201600-174211200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr4:174201800-174204200 ZNF genes & repeats Primary hematopoietic stem cells blood
20 chr4:174202200-174203600 Enhancers GM12878-XiMat blood
21 chr4:174202200-174203800 Enhancers Primary B cells from peripheral blood blood
22 chr4:174202200-174204000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
23 chr4:174202400-174203600 Genic enhancers Primary B cells from cord blood blood
24 chr4:174202400-174204200 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
25 chr4:174202400-174204800 Transcr. at gene 5' and 3' Fetal Thymus thymus
26 chr4:174202600-174203600 Enhancers Primary neutrophils fromperipheralblood blood
27 chr4:174202600-174203600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
28 chr4:174202600-174204000 Enhancers Fetal Heart heart
29 chr4:174202800-174203600 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr4:174202800-174203600 Enhancers Brain Germinal Matrix brain
31 chr4:174202800-174203800 Active TSS Stomach Smooth Muscle stomach
32 chr4:174202800-174204600 Weak transcription Fetal Stomach stomach
33 chr4:174202800-174205600 Weak transcription Dnd41 blood
34 chr4:174202800-174207400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr4:174203000-174203600 Active TSS Brain Hippocampus Middle brain
36 chr4:174203000-174203800 Active TSS Brain Anterior Caudate brain
37 chr4:174203000-174203800 Active TSS Brain Inferior Temporal Lobe brain
38 chr4:174203000-174204600 Active TSS Thymus Thymus
39 chr4:174203000-174206600 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr4:174203000-174208600 Weak transcription Aorta Aorta
41 chr4:174203200-174203600 Active TSS Cortex derived primary cultured neurospheres brain
42 chr4:174203200-174203600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
43 chr4:174203200-174203600 Flanking Active TSS Right Atrium heart
44 chr4:174203200-174203600 Active TSS K562 blood
45 chr4:174203200-174203800 Enhancers Monocytes-CD14+_RO01746 blood
46 chr4:174203200-174204000 ZNF genes & repeats Primary T cells from cord blood blood
47 chr4:174203200-174204400 Strong transcription Fetal Intestine Large intestine
48 chr4:174203200-174214800 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015