Variant report

Variant	rs28368617
Chromosome Location	chr8:111930407-111930408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10086946	1.00[AMR][1000 genomes]
rs10087455	1.00[AMR][1000 genomes]
rs10101999	1.00[AMR][1000 genomes]
rs10104689	1.00[AMR][1000 genomes]
rs10113719	1.00[AMR][1000 genomes]
rs11990835	1.00[AMR][1000 genomes]
rs13439353	1.00[AMR][1000 genomes]
rs28420450	1.00[AMR][1000 genomes]
rs28455658	1.00[AMR][1000 genomes]
rs28477269	1.00[AMR][1000 genomes]
rs28488282	1.00[AMR][1000 genomes]
rs28497176	1.00[AMR][1000 genomes]
rs28649419	1.00[AMR][1000 genomes]
rs28658301	1.00[AMR][1000 genomes]
rs28670072	1.00[AMR][1000 genomes]
rs28708482	1.00[AMR][1000 genomes]
rs28851510	1.00[AMR][1000 genomes]
rs9987192	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111927400-111930600	Weak transcription	HUVEC	blood vessel
2	chr8:111929600-111942400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:111930200-111931000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:111930400-111930600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:111930400-111931000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:111930400-111931000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:111930400-111931200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:111930400-111931200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:111930400-111931200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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