Variant report

Variant	rs28477269
Chromosome Location	chr8:111862290-111862291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:77766844..77769049-chr8:111860348..111862470,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10086946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10087455	1.00[AMR][1000 genomes]
rs10101999	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102006	1.00[AMR][1000 genomes]
rs10104689	1.00[AMR][1000 genomes]
rs10108592	1.00[AMR][1000 genomes]
rs10113719	1.00[AMR][1000 genomes]
rs13439353	1.00[AMR][1000 genomes]
rs28368617	1.00[AMR][1000 genomes]
rs28455658	1.00[AMR][1000 genomes]
rs28488282	1.00[AMR][1000 genomes]
rs28497176	1.00[AMR][1000 genomes]
rs28603055	1.00[AMR][1000 genomes]
rs28649419	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28658301	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670072	1.00[AMR][1000 genomes]
rs28708482	1.00[AMR][1000 genomes]
rs28851510	1.00[AMR][1000 genomes]
rs9987192	1.00[AMR][1000 genomes]
rs9987348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1033792	chr8:111824536-111906864	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111860200-111862800	Enhancers	Fetal Intestine Small	intestine
2	chr8:111861400-111862400	Enhancers	A549	lung
3	chr8:111862000-111862800	Enhancers	Brain Germinal Matrix	brain
4	chr8:111862200-111862800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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