Variant report

Variant	rs28369670
Chromosome Location	chr9:97387915-97387916
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97334835..97337709-chr9:97386591..97389004,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1042144	0.84[EUR][1000 genomes]
rs10821376	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993275	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10993277	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993278	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12238876	0.85[EUR][1000 genomes]
rs13284668	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13291835	0.86[EUR][1000 genomes]
rs13296485	0.88[EUR][1000 genomes]
rs16937175	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1754435	0.83[EUR][1000 genomes]
rs1754439	0.85[EUR][1000 genomes]
rs2296708	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2679599	0.85[EUR][1000 genomes]
rs2679600	0.85[EUR][1000 genomes]
rs2772022	0.84[EUR][1000 genomes]
rs2790390	0.85[EUR][1000 genomes]
rs2987897	0.83[EUR][1000 genomes]
rs2993905	0.88[EUR][1000 genomes]
rs2993912	0.88[EUR][1000 genomes]
rs2993958	0.84[EUR][1000 genomes]
rs2993959	0.84[EUR][1000 genomes]
rs2993961	0.84[EUR][1000 genomes]
rs2993962	0.82[EUR][1000 genomes]
rs3896183	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4075984	0.88[EUR][1000 genomes]
rs4743961	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744362	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs547834	0.82[EUR][1000 genomes]
rs548348	0.84[EUR][1000 genomes]
rs583365	0.85[EUR][1000 genomes]
rs67721291	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192689	0.87[EUR][1000 genomes]
rs874248	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97374600-97392600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97381400-97389800	Weak transcription	Pancreas	Pancrea
5	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
7	chr9:97382600-97392800	Weak transcription	Lung	lung
8	chr9:97382600-97393000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:97382800-97388200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:97382800-97399400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:97383800-97390200	Strong transcription	Fetal Intestine Small	intestine
12	chr9:97385000-97388200	Weak transcription	Fetal Thymus	thymus
13	chr9:97385800-97392800	Weak transcription	Fetal Lung	lung
14	chr9:97386000-97389800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:97387000-97388200	Strong transcription	Fetal Intestine Large	intestine
16	chr9:97387200-97388000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:97387200-97389000	Genic enhancers	Liver	Liver
18	chr9:97387400-97390000	Weak transcription	Stomach Mucosa	stomach
19	chr9:97387600-97388000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:97387600-97388400	Enhancers	Gastric	stomach
21	chr9:97387600-97389000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr9:97387600-97393200	Weak transcription	Fetal Stomach	stomach

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