Variant report

Variant	rs3896183
Chromosome Location	chr9:97404920-97404921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr9:97404855-97405128	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:58637930..58639560-chr9:97403785..97405324,2	MCF-7	breast:

Variant related genes	Relation type
FBP1	TF binding region
ENSG00000267678	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1042144	0.83[EUR][1000 genomes]
rs10761350	0.83[ASN][1000 genomes]
rs10821376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821377	0.83[ASN][1000 genomes]
rs10993275	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993278	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238876	0.84[EUR][1000 genomes]
rs13284668	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13291835	0.86[EUR][1000 genomes]
rs13296485	0.87[EUR][1000 genomes]
rs16937175	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754435	0.83[EUR][1000 genomes]
rs1754439	0.85[EUR][1000 genomes]
rs2296708	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2679599	0.84[EUR][1000 genomes]
rs2679600	0.84[EUR][1000 genomes]
rs2772022	0.84[EUR][1000 genomes]
rs2790390	0.84[EUR][1000 genomes]
rs28369670	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2987897	0.83[EUR][1000 genomes]
rs2993912	0.83[EUR][1000 genomes]
rs2993958	0.83[EUR][1000 genomes]
rs2993959	0.83[EUR][1000 genomes]
rs2993961	0.83[EUR][1000 genomes]
rs2993962	0.82[EUR][1000 genomes]
rs4075984	0.87[EUR][1000 genomes]
rs4743961	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743962	0.94[ASN][1000 genomes]
rs4744362	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547834	0.81[EUR][1000 genomes]
rs548348	0.83[EUR][1000 genomes]
rs583365	0.84[EUR][1000 genomes]
rs6479560	0.83[ASN][1000 genomes]
rs67721291	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8192689	0.86[EUR][1000 genomes]
rs874248	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402200-97410400	Weak transcription	Esophagus	oesophagus
2	chr9:97402400-97406600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
4	chr9:97402600-97411000	Weak transcription	Gastric	stomach
5	chr9:97402600-97415400	Weak transcription	Spleen	Spleen
6	chr9:97402800-97405600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:97402800-97411600	Weak transcription	Primary B cells from cord blood	blood
8	chr9:97403000-97405000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:97403000-97406800	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97403000-97406800	Weak transcription	Placenta	Placenta
11	chr9:97403000-97410600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:97403200-97405600	Weak transcription	Stomach Mucosa	stomach
13	chr9:97403200-97406600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:97403400-97406800	Weak transcription	Fetal Intestine Small	intestine
15	chr9:97404000-97408200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:97404800-97405000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:97404800-97405400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:97404800-97405600	Enhancers	Lung	lung
19	chr9:97404800-97406200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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