Variant report

Variant	rs4743962
Chromosome Location	chr9:97409311-97409312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97406984..97409530-chr9:97419873..97421419,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10761350	0.81[ASN][1000 genomes]
rs10821376	0.96[ASN][1000 genomes]
rs10821377	0.81[ASN][1000 genomes]
rs10993275	0.94[ASN][1000 genomes]
rs10993277	0.94[ASN][1000 genomes]
rs10993278	0.94[ASN][1000 genomes]
rs16937175	0.94[ASN][1000 genomes]
rs2296708	0.90[ASN][1000 genomes]
rs3896183	0.94[ASN][1000 genomes]
rs4743961	0.92[ASN][1000 genomes]
rs4744362	0.94[ASN][1000 genomes]
rs6479560	0.81[ASN][1000 genomes]
rs67721291	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402200-97410400	Weak transcription	Esophagus	oesophagus
2	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
3	chr9:97402600-97411000	Weak transcription	Gastric	stomach
4	chr9:97402600-97415400	Weak transcription	Spleen	Spleen
5	chr9:97402800-97411600	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97403000-97410600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:97405000-97410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:97405200-97411200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:97405800-97410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:97405800-97418400	Weak transcription	Fetal Stomach	stomach
11	chr9:97406200-97410400	Weak transcription	Lung	lung
12	chr9:97406400-97410800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:97407000-97410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:97407000-97410800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:97407000-97410800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:97407000-97411600	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:97407000-97411800	Weak transcription	Placenta	Placenta
18	chr9:97407200-97410000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr9:97407200-97410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:97407200-97410200	Weak transcription	Hela-S3	cervix
21	chr9:97407200-97410200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:97407200-97410400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:97407400-97410200	Weak transcription	HMEC	breast
24	chr9:97407400-97410400	Weak transcription	NHEK	skin
25	chr9:97407600-97410800	Weak transcription	HSMM	muscle
26	chr9:97408400-97411000	Weak transcription	HSMMtube	muscle
27	chr9:97408600-97410800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:97408800-97411600	Weak transcription	Fetal Intestine Small	intestine
29	chr9:97409000-97409400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:97409000-97410200	Weak transcription	Stomach Mucosa	stomach

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