Variant report

Variant	rs28369750
Chromosome Location	chr9:97369944-97369945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97369469..97371530-chr9:97378423..97380826,2	K562	blood:
2	chr9:97365760..97367307-chr9:97368033..97370545,2	MCF-7	breast:
3	chr9:97368431..97370242-chr9:97374099..97376854,2	MCF-7	breast:
4	chr9:97368983..97370788-chr9:97391157..97393414,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16910256	1.00[AMR][1000 genomes]
rs16910744	1.00[EUR][1000 genomes]
rs28369681	1.00[EUR][1000 genomes]
rs28369711	1.00[EUR][1000 genomes]
rs28369719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369730	1.00[EUR][1000 genomes]
rs28369757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369766	1.00[EUR][1000 genomes]
rs28369773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402403	1.00[EUR][1000 genomes]
rs28745273	1.00[EUR][1000 genomes]
rs3935327	1.00[EUR][1000 genomes]
rs55683730	1.00[AMR][1000 genomes]
rs55893861	1.00[AMR][1000 genomes]
rs55940941	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55951079	1.00[AMR][1000 genomes]
rs59814151	1.00[AMR][1000 genomes]
rs60667502	1.00[AMR][1000 genomes]
rs73653477	1.00[AMR][1000 genomes]
rs73653478	1.00[AMR][1000 genomes]
rs73653479	1.00[AMR][1000 genomes]
rs73653480	1.00[AMR][1000 genomes]
rs73653481	1.00[AMR][1000 genomes]
rs73653482	1.00[AMR][1000 genomes]
rs73653485	1.00[AMR][1000 genomes]
rs7468885	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97364400-97382800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:97364800-97382800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr9:97365000-97375400	Genic enhancers	Fetal Intestine Small	intestine
5	chr9:97365000-97376200	Genic enhancers	Liver	Liver
6	chr9:97365800-97370400	Weak transcription	Pancreas	Pancrea
7	chr9:97365800-97373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:97366200-97371600	Weak transcription	Fetal Heart	heart
9	chr9:97366600-97370400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:97366600-97384400	Weak transcription	Small Intestine	intestine
11	chr9:97367000-97370800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:97368200-97370000	Strong transcription	Lung	lung
13	chr9:97368400-97375200	Enhancers	Stomach Mucosa	stomach
14	chr9:97368800-97370800	Flanking Active TSS	HepG2	liver
15	chr9:97369200-97370600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr9:97369200-97370800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr9:97369200-97370800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr9:97369200-97371200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:97369200-97371800	Enhancers	Fetal Intestine Large	intestine
20	chr9:97369200-97372400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:97369400-97371200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:97369400-97372000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:97369400-97372200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:97369400-97373400	Enhancers	Fetal Lung	lung
25	chr9:97369600-97370200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr9:97369600-97371200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr9:97369600-97371200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr9:97369800-97370000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr9:97369800-97370000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:97369800-97370000	Flanking Active TSS	Colonic Mucosa	Colon
31	chr9:97369800-97370200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:97369800-97370400	Enhancers	Fetal Stomach	stomach
33	chr9:97369800-97370600	Enhancers	Fetal Kidney	kidney
34	chr9:97369800-97370800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr9:97369800-97371200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr9:97369800-97371800	Weak transcription	Gastric	stomach
37	chr9:97369800-97372600	Enhancers	Placenta	Placenta

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