Variant report

Variant	rs73653480
Chromosome Location	chr9:97313690-97313691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97308118..97310790-chr9:97312751..97314524,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1015120	1.00[EUR][1000 genomes]
rs16910256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369719	1.00[AMR][1000 genomes]
rs28369750	1.00[AMR][1000 genomes]
rs28369757	1.00[AMR][1000 genomes]
rs28369773	1.00[AMR][1000 genomes]
rs55683730	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940941	1.00[AMR][1000 genomes]
rs55951079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59814151	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60667502	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653475	1.00[EUR][1000 genomes]
rs73653476	1.00[EUR][1000 genomes]
rs73653477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653479	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653486	1.00[EUR][1000 genomes]
rs73653488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv972786	chr9:97308737-97320211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97296400-97314200	Weak transcription	Liver	Liver
2	chr9:97297200-97315000	Weak transcription	HepG2	liver
3	chr9:97302600-97315000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:97304800-97315200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:97311600-97315200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:97312000-97315600	Weak transcription	A549	lung
7	chr9:97312400-97313800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:97313000-97316800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:97313200-97315000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:97313200-97316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:97313400-97315600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:97313600-97316000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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