Variant report

Variant	rs1015120
Chromosome Location	chr9:97278451-97278452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100806149..100807853-chr9:97276402..97278973,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16910222	1.00[AMR][1000 genomes]
rs16910256	1.00[EUR][1000 genomes]
rs28369711	1.00[AMR][1000 genomes]
rs28369787	1.00[AMR][1000 genomes]
rs28402403	1.00[AMR][1000 genomes]
rs3935327	1.00[AMR][1000 genomes]
rs4645611	1.00[AMR][1000 genomes]
rs55683730	1.00[EUR][1000 genomes]
rs55716312	1.00[AMR][1000 genomes]
rs55865537	1.00[AMR][1000 genomes]
rs55893861	1.00[EUR][1000 genomes]
rs55945386	1.00[AMR][1000 genomes]
rs55950906	1.00[AMR][1000 genomes]
rs55951079	1.00[EUR][1000 genomes]
rs56104958	1.00[AMR][1000 genomes]
rs58222891	1.00[AMR][1000 genomes]
rs59066424	1.00[AMR][1000 genomes]
rs59814151	1.00[EUR][1000 genomes]
rs60667502	1.00[EUR][1000 genomes]
rs60718833	1.00[AMR][1000 genomes]
rs61353461	1.00[AMR][1000 genomes]
rs61670189	1.00[AMR][1000 genomes]
rs73653475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653477	1.00[EUR][1000 genomes]
rs73653478	1.00[EUR][1000 genomes]
rs73653479	1.00[EUR][1000 genomes]
rs73653480	1.00[EUR][1000 genomes]
rs73653481	1.00[EUR][1000 genomes]
rs73653482	1.00[EUR][1000 genomes]
rs73653485	1.00[EUR][1000 genomes]
rs73653486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv969761	chr9:97254596-97288069	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97278000-97279800	Weak transcription	HepG2	liver
2	chr9:97278000-97295200	Weak transcription	Liver	Liver

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