Variant report

Variant	rs73653486
Chromosome Location	chr9:97333630-97333631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97332451..97335013-chr9:97342428..97345241,2	MCF-7	breast:
2	chr9:97333350..97335028-chr9:97336990..97339754,2	MCF-7	breast:
3	chr9:97322900..97325527-chr9:97331742..97334023,2	MCF-7	breast:
4	chr9:97219790..97221474-chr9:97332008..97334715,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1015120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12685623	1.00[AMR][1000 genomes]
rs16910222	1.00[AMR][1000 genomes]
rs16910256	1.00[EUR][1000 genomes]
rs16911665	1.00[AMR][1000 genomes]
rs16911678	1.00[AMR][1000 genomes]
rs16911679	1.00[AMR][1000 genomes]
rs28369711	1.00[AMR][1000 genomes]
rs28369787	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28402403	1.00[AMR][1000 genomes]
rs3935327	1.00[AMR][1000 genomes]
rs4645611	1.00[AMR][1000 genomes]
rs55683730	1.00[EUR][1000 genomes]
rs55716312	1.00[AMR][1000 genomes]
rs55865537	1.00[AMR][1000 genomes]
rs55893861	1.00[EUR][1000 genomes]
rs55945386	1.00[AMR][1000 genomes]
rs55950906	1.00[AMR][1000 genomes]
rs55951079	1.00[EUR][1000 genomes]
rs56104958	1.00[AMR][1000 genomes]
rs56836699	1.00[AMR][1000 genomes]
rs56947670	1.00[AMR][1000 genomes]
rs58222891	1.00[AMR][1000 genomes]
rs58589586	1.00[AMR][1000 genomes]
rs59066424	1.00[AMR][1000 genomes]
rs59169111	1.00[AMR][1000 genomes]
rs59814151	1.00[EUR][1000 genomes]
rs60239830	1.00[AMR][1000 genomes]
rs60667502	1.00[EUR][1000 genomes]
rs60718833	1.00[AMR][1000 genomes]
rs60774169	1.00[AMR][1000 genomes]
rs61353461	1.00[AMR][1000 genomes]
rs61670189	1.00[AMR][1000 genomes]
rs73653475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653477	1.00[EUR][1000 genomes]
rs73653478	1.00[EUR][1000 genomes]
rs73653479	1.00[EUR][1000 genomes]
rs73653480	1.00[EUR][1000 genomes]
rs73653481	1.00[EUR][1000 genomes]
rs73653482	1.00[EUR][1000 genomes]
rs73653485	1.00[EUR][1000 genomes]
rs73653488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv521698	chr9:97333275-97338221	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97317200-97354000	Weak transcription	Gastric	stomach
2	chr9:97325800-97339200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:97326800-97339200	Weak transcription	Fetal Stomach	stomach
4	chr9:97331400-97340000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:97333200-97335400	Strong transcription	Skeletal Muscle Female	skeletal muscle

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