Variant report

Variant	rs60239830
Chromosome Location	chr9:97533885-97533886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97529221..97532775-chr9:97533309..97537011,4	K562	blood:
2	chr9:97533421..97535865-chr9:97540568..97543097,2	K562	blood:
3	chr9:97525840..97529015-chr9:97532404..97535563,3	K562	blood:
4	chr9:97530626..97534561-chr9:97683586..97686603,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12685623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16911665	1.00[AMR][1000 genomes]
rs16911678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16911679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28369711	1.00[AMR][1000 genomes]
rs28369787	1.00[AMR][1000 genomes]
rs28402403	1.00[AMR][1000 genomes]
rs3935327	1.00[AMR][1000 genomes]
rs56836699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56947670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58589586	1.00[AMR][1000 genomes]
rs59169111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60774169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7027571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7044110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72748515	1.00[AMR][1000 genomes]
rs73653486	1.00[AMR][1000 genomes]
rs73653488	1.00[AMR][1000 genomes]
rs7848054	1.00[AMR][1000 genomes]
rs7849970	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
2	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
4	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
6	chr9:97522400-97540400	Weak transcription	Fetal Heart	heart
7	chr9:97522800-97534600	Weak transcription	Fetal Brain Male	brain
8	chr9:97522800-97534600	Weak transcription	NHLF	lung
9	chr9:97523000-97534600	Weak transcription	Ovary	ovary
10	chr9:97523200-97535000	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:97523400-97534400	Weak transcription	Osteobl	bone
12	chr9:97523400-97534600	Weak transcription	Right Atrium	heart
13	chr9:97523400-97535600	Weak transcription	Aorta	Aorta
14	chr9:97523400-97535800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:97523400-97541400	Weak transcription	NHEK	skin
16	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:97523400-97545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:97523400-97545200	Weak transcription	Liver	Liver
20	chr9:97523400-97545200	Weak transcription	Lung	lung
21	chr9:97523400-97545400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:97523400-97552600	Weak transcription	Dnd41	blood
23	chr9:97523400-97554000	Weak transcription	Primary T cells from cord blood	blood
24	chr9:97523400-97557800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:97523400-97563800	Weak transcription	Fetal Kidney	kidney
26	chr9:97523600-97534600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:97523600-97534600	Weak transcription	HSMM	muscle
28	chr9:97523600-97534600	Weak transcription	HSMMtube	muscle
29	chr9:97523600-97535200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:97523600-97535200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:97523600-97535600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr9:97523600-97535800	Weak transcription	HepG2	liver
33	chr9:97523600-97536000	Weak transcription	Spleen	Spleen
34	chr9:97523600-97540400	Weak transcription	A549	lung
35	chr9:97523600-97545000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:97523600-97545200	Weak transcription	Left Ventricle	heart
37	chr9:97523600-97549400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:97523600-97552600	Weak transcription	Thymus	Thymus
39	chr9:97523600-97554400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr9:97523800-97544200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:97524000-97534000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:97524000-97534400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:97524000-97534600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:97524000-97534600	Weak transcription	Fetal Thymus	thymus
45	chr9:97524000-97535200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:97524000-97535400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:97524000-97541400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:97524000-97541400	Weak transcription	Hela-S3	cervix
49	chr9:97524000-97544600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:97524000-97553200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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