Variant report

Variant	rs28370928
Chromosome Location	chr4:95835897-95835898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95823535..95826379-chr4:95835891..95838030,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10004105	0.89[AFR][1000 genomes]
rs10017715	1.00[AFR][1000 genomes]
rs10018640	0.89[AFR][1000 genomes]
rs10025323	0.89[AFR][1000 genomes]
rs10029909	0.89[AFR][1000 genomes]
rs10030345	0.90[AFR][1000 genomes]
rs10032844	1.00[AFR][1000 genomes]
rs10033654	0.89[AFR][1000 genomes]
rs28411193	0.89[AFR][1000 genomes]
rs28452896	1.00[AFR][1000 genomes]
rs28455759	0.89[AFR][1000 genomes]
rs28463939	0.89[AFR][1000 genomes]
rs28464868	1.00[AFR][1000 genomes]
rs28498447	1.00[AFR][1000 genomes]
rs28505212	0.94[AFR][1000 genomes]
rs28540611	0.89[AFR][1000 genomes]
rs28553521	1.00[AFR][1000 genomes]
rs28574698	0.89[AFR][1000 genomes]
rs28599821	1.00[AFR][1000 genomes]
rs28626130	0.89[AFR][1000 genomes]
rs28647276	1.00[AFR][1000 genomes]
rs28657448	1.00[AFR][1000 genomes]
rs28700146	0.89[AFR][1000 genomes]
rs28711968	0.89[AFR][1000 genomes]
rs28733854	1.00[AFR][1000 genomes]
rs28880074	0.89[AFR][1000 genomes]
rs6532514	0.89[AFR][1000 genomes]
rs9994321	1.00[AFR][1000 genomes]
rs9999603	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95837600	Weak transcription	Fetal Kidney	kidney
3	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:95833400-95836600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr4:95835200-95837600	Weak transcription	Thymus	Thymus
6	chr4:95835400-95836000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:95835600-95836000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95835600-95837200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:95835800-95836600	Enhancers	Dnd41	blood

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