Variant report

Variant	rs28540611
Chromosome Location	chr4:95791524-95791525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10002769	0.84[AFR][1000 genomes]
rs10004105	1.00[AFR][1000 genomes]
rs10008028	0.89[AFR][1000 genomes]
rs10017715	0.89[AFR][1000 genomes]
rs10018640	1.00[AFR][1000 genomes]
rs10025323	1.00[AFR][1000 genomes]
rs10029909	1.00[AFR][1000 genomes]
rs10032844	0.89[AFR][1000 genomes]
rs10033654	1.00[AFR][1000 genomes]
rs28370928	0.89[AFR][1000 genomes]
rs28411193	1.00[AFR][1000 genomes]
rs28436246	0.89[AFR][1000 genomes]
rs28438046	0.89[AFR][1000 genomes]
rs28452896	0.89[AFR][1000 genomes]
rs28455759	1.00[AFR][1000 genomes]
rs28463939	1.00[AFR][1000 genomes]
rs28464868	0.89[AFR][1000 genomes]
rs28498447	0.89[AFR][1000 genomes]
rs28503836	0.89[AFR][1000 genomes]
rs28505212	0.83[AFR][1000 genomes]
rs28553521	0.89[AFR][1000 genomes]
rs28574698	1.00[AFR][1000 genomes]
rs28583284	0.89[AFR][1000 genomes]
rs28593188	0.84[AFR][1000 genomes]
rs28599821	0.89[AFR][1000 genomes]
rs28626130	1.00[AFR][1000 genomes]
rs28647276	0.89[AFR][1000 genomes]
rs28649036	0.89[AFR][1000 genomes]
rs28657448	0.89[AFR][1000 genomes]
rs28691063	0.89[AFR][1000 genomes]
rs28700146	1.00[AFR][1000 genomes]
rs28711968	1.00[AFR][1000 genomes]
rs28712832	0.84[AFR][1000 genomes]
rs28733854	0.89[AFR][1000 genomes]
rs28867373	0.89[AFR][1000 genomes]
rs28880074	1.00[AFR][1000 genomes]
rs6532514	1.00[AFR][1000 genomes]
rs7658799	0.89[AFR][1000 genomes]
rs7661053	0.89[AFR][1000 genomes]
rs7670449	0.89[AFR][1000 genomes]
rs9994321	0.89[AFR][1000 genomes]
rs9999603	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
2	chr4:95789600-95792000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95789600-95792000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95790200-95793000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:95791000-95792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:95791000-95792200	Enhancers	Dnd41	blood
7	chr4:95791200-95792000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:95791400-95791600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:95791400-95792800	Enhancers	A549	lung
10	chr4:95791400-95794000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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