Variant report

Variant	rs10002769
Chromosome Location	chr4:95699826-95699827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95689034..95690776-chr4:95698593..95701068,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10004105	0.84[AFR][1000 genomes]
rs10008028	0.95[AFR][1000 genomes]
rs10018640	0.84[AFR][1000 genomes]
rs10023621	0.95[AFR][1000 genomes]
rs10025323	0.84[AFR][1000 genomes]
rs10029909	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10030345	1.00[YRI][hapmap]
rs10033654	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs28411193	0.84[AFR][1000 genomes]
rs28436246	0.95[AFR][1000 genomes]
rs28438046	0.95[AFR][1000 genomes]
rs28455759	0.84[AFR][1000 genomes]
rs28456333	0.80[AFR][1000 genomes]
rs28463939	0.84[AFR][1000 genomes]
rs28503836	0.95[AFR][1000 genomes]
rs28540611	0.84[AFR][1000 genomes]
rs28574698	0.84[AFR][1000 genomes]
rs28593188	1.00[AFR][1000 genomes]
rs28620797	0.95[AFR][1000 genomes]
rs28626130	0.84[AFR][1000 genomes]
rs28643271	0.95[AFR][1000 genomes]
rs28649036	0.95[AFR][1000 genomes]
rs28655450	0.95[AFR][1000 genomes]
rs28691063	0.95[AFR][1000 genomes]
rs28700146	0.84[AFR][1000 genomes]
rs28711968	0.84[AFR][1000 genomes]
rs28712832	1.00[AFR][1000 genomes]
rs28867373	0.95[AFR][1000 genomes]
rs28880074	0.84[AFR][1000 genomes]
rs6532514	0.84[AFR][1000 genomes]
rs7658799	0.95[AFR][1000 genomes]
rs7661053	0.95[AFR][1000 genomes]
rs7670449	0.95[AFR][1000 genomes]
rs9994321	1.00[YRI][hapmap]
rs9999603	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95683000-95703600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95699800-95700000	ZNF genes & repeats	A549	lung

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