Variant report

Variant	rs28593188
Chromosome Location	chr4:95691928-95691929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95677407..95680207-chr4:95691572..95693719,2	K562	blood:

Variant related genes	Relation type
ENSG00000138696	Chromatin interaction
ENSG00000249599	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10002769	1.00[AFR][1000 genomes]
rs10004105	0.84[AFR][1000 genomes]
rs10008028	0.95[AFR][1000 genomes]
rs10018640	0.84[AFR][1000 genomes]
rs10023621	0.95[AFR][1000 genomes]
rs10025323	0.84[AFR][1000 genomes]
rs10029909	0.84[AFR][1000 genomes]
rs10033654	0.84[AFR][1000 genomes]
rs28411193	0.84[AFR][1000 genomes]
rs28436246	0.95[AFR][1000 genomes]
rs28438046	0.95[AFR][1000 genomes]
rs28455759	0.84[AFR][1000 genomes]
rs28456333	0.80[AFR][1000 genomes]
rs28463939	0.84[AFR][1000 genomes]
rs28503836	0.95[AFR][1000 genomes]
rs28540611	0.84[AFR][1000 genomes]
rs28574698	0.84[AFR][1000 genomes]
rs28620797	0.95[AFR][1000 genomes]
rs28626130	0.84[AFR][1000 genomes]
rs28643271	0.95[AFR][1000 genomes]
rs28649036	0.95[AFR][1000 genomes]
rs28655450	0.95[AFR][1000 genomes]
rs28691063	0.95[AFR][1000 genomes]
rs28700146	0.84[AFR][1000 genomes]
rs28711968	0.84[AFR][1000 genomes]
rs28712832	1.00[AFR][1000 genomes]
rs28867373	0.95[AFR][1000 genomes]
rs28880074	0.84[AFR][1000 genomes]
rs6532514	0.84[AFR][1000 genomes]
rs7658799	0.95[AFR][1000 genomes]
rs7661053	0.95[AFR][1000 genomes]
rs7670449	0.95[AFR][1000 genomes]
rs9999603	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95683000-95703600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95686200-95695000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95689800-95692800	Enhancers	A549	lung
4	chr4:95691800-95693800	Weak transcription	Psoas Muscle	Psoas

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