Variant report

Variant	rs7658799
Chromosome Location	chr4:95730892-95730893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10002769	0.95[AFR][1000 genomes]
rs10004105	0.89[AFR][1000 genomes]
rs10008028	1.00[AFR][1000 genomes]
rs10018640	0.89[AFR][1000 genomes]
rs10023621	0.89[AFR][1000 genomes]
rs10025323	0.89[AFR][1000 genomes]
rs10029909	0.89[AFR][1000 genomes]
rs10033654	0.89[AFR][1000 genomes]
rs28411193	0.89[AFR][1000 genomes]
rs28436246	1.00[AFR][1000 genomes]
rs28438046	1.00[AFR][1000 genomes]
rs28455759	0.89[AFR][1000 genomes]
rs28456333	0.85[AFR][1000 genomes]
rs28463939	0.89[AFR][1000 genomes]
rs28503836	1.00[AFR][1000 genomes]
rs28540611	0.89[AFR][1000 genomes]
rs28574698	0.89[AFR][1000 genomes]
rs28593188	0.95[AFR][1000 genomes]
rs28620797	0.89[AFR][1000 genomes]
rs28626130	0.89[AFR][1000 genomes]
rs28643271	0.90[AFR][1000 genomes]
rs28649036	1.00[AFR][1000 genomes]
rs28655450	0.90[AFR][1000 genomes]
rs28691063	1.00[AFR][1000 genomes]
rs28700146	0.89[AFR][1000 genomes]
rs28711968	0.89[AFR][1000 genomes]
rs28712832	0.95[AFR][1000 genomes]
rs28867373	1.00[AFR][1000 genomes]
rs28880074	0.89[AFR][1000 genomes]
rs6532514	0.89[AFR][1000 genomes]
rs7661053	1.00[AFR][1000 genomes]
rs7670449	1.00[AFR][1000 genomes]
rs9999603	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95710400-95732400	Weak transcription	Aorta	Aorta
2	chr4:95723000-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:95723600-95733600	Weak transcription	Ovary	ovary
4	chr4:95727800-95732200	Weak transcription	A549	lung
5	chr4:95728000-95738200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95730400-95731200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:95730600-95731000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:95730600-95731000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:95730600-95731000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:95730800-95731000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:95730800-95731200	Enhancers	Stomach Mucosa	stomach
12	chr4:95730800-95732600	Enhancers	Fetal Heart	heart

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