Variant report

Variant	rs28373405
Chromosome Location	chr9:92681542-92681543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:92216311..92217092-chr9:92681068..92681874,2	MCF-7	breast:
2	chr9:92681447..92682404-chr9:92758846..92759379,3	MCF-7	breast:
3	chr9:92217623..92219190-chr9:92681257..92682398,15	MCF-7	breast:
4	chr9:92680975..92683191-chr9:92752643..92754269,2	MCF-7	breast:
5	chr9:92217841..92222641-chr9:92679830..92688712,19	MCF-7	breast:
6	chr9:92681413..92682319-chr9:92861601..92862185,2	MCF-7	breast:
7	chr9:92218340..92221037-chr9:92678847..92682964,5	MCF-7	breast:
8	chr9:92217349..92218460-chr9:92681070..92682130,5	MCF-7	breast:
9	chr9:92230269..92231261-chr9:92681329..92682051,4	MCF-7	breast:
10	chr9:92213479..92214183-chr9:92681404..92682203,3	MCF-7	breast:
11	chr9:92262537..92264603-chr9:92680059..92681968,2	MCF-7	breast:
12	chr9:92681495..92682068-chr9:92758708..92759575,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117690	0.84[EUR][1000 genomes]
rs10120057	0.81[ASN][1000 genomes]
rs1036700	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761340	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10821092	0.81[ASN][1000 genomes]
rs10992771	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993647	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12235508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12235763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16905869	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743952	0.81[ASN][1000 genomes]
rs4744365	0.81[ASN][1000 genomes]
rs62556807	0.89[EUR][1000 genomes]
rs62556808	0.89[EUR][1000 genomes]
rs7021720	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92679000-92683000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:92679000-92684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:92679400-92681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:92679400-92681800	Enhancers	Placenta	Placenta
5	chr9:92679600-92685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:92680000-92685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:92680400-92681800	Enhancers	Right Ventricle	heart
8	chr9:92680400-92685000	Weak transcription	Pancreas	Pancrea
9	chr9:92680600-92682800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:92681000-92681800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:92681000-92681800	Enhancers	Fetal Heart	heart
12	chr9:92681200-92681800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:92681200-92681800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:92681200-92681800	Enhancers	Fetal Intestine Small	intestine
15	chr9:92681400-92681600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:92681400-92681600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr9:92681400-92681600	Enhancers	Right Atrium	heart
18	chr9:92681400-92681800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:92681400-92681800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:92681400-92681800	Enhancers	Fetal Intestine Large	intestine
21	chr9:92681400-92681800	Enhancers	Left Ventricle	heart
22	chr9:92681400-92682000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:92681400-92682000	Enhancers	Liver	Liver

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