Variant report

Variant	rs62556808
Chromosome Location	chr9:92682590-92682591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92680975..92683191-chr9:92752643..92754269,2	MCF-7	breast:
2	chr9:92217841..92222641-chr9:92679830..92688712,19	MCF-7	breast:
3	chr9:92218340..92221037-chr9:92678847..92682964,5	MCF-7	breast:
4	chr9:92682411..92684734-chr9:92700082..92701810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1036700	0.91[EUR][1000 genomes]
rs10992771	0.89[EUR][1000 genomes]
rs10993647	0.92[EUR][1000 genomes]
rs12235508	0.89[EUR][1000 genomes]
rs12235763	0.89[EUR][1000 genomes]
rs16905869	0.91[EUR][1000 genomes]
rs28373405	0.89[EUR][1000 genomes]
rs62556807	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021720	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92679000-92683000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:92679000-92684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:92679600-92685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:92680000-92685600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:92680400-92685000	Weak transcription	Pancreas	Pancrea
6	chr9:92680600-92682800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
8	chr9:92681800-92684200	Weak transcription	Fetal Heart	heart
9	chr9:92681800-92685400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:92681800-92686000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:92681800-92686200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:92681800-92686200	Weak transcription	Fetal Intestine Large	intestine
13	chr9:92681800-92686200	Weak transcription	Fetal Intestine Small	intestine
14	chr9:92681800-92686200	Weak transcription	Placenta	Placenta
15	chr9:92681800-92686200	Weak transcription	Left Ventricle	heart
16	chr9:92681800-92689000	Weak transcription	Right Ventricle	heart
17	chr9:92682000-92683200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:92682000-92685000	Weak transcription	Liver	Liver
19	chr9:92682000-92689200	Weak transcription	Lung	lung
20	chr9:92682400-92682600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:92682400-92683000	Enhancers	Brain Inferior Temporal Lobe	brain

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