Variant report

Variant	rs2837451
Chromosome Location	chr21:41513858-41513859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1011765	0.84[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs11911749	1.00[ASW][hapmap];0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13046032	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13046959	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1474492	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4816674	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62237641	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8130732	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8132673	0.81[CEU][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8134334	0.82[AMR][1000 genomes]
rs9978731	0.96[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2837451	B3GALT5	cis	cerebellum	SCAN
rs2837451	C2CD2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
3	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:41503000-41518400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
6	chr21:41510800-41525800	Weak transcription	Brain Germinal Matrix	brain
7	chr21:41511000-41518600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr21:41513000-41520600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr21:41513200-41523200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr21:41513400-41524400	Weak transcription	Fetal Brain Female	brain
11	chr21:41513600-41514200	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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