Variant report

Variant	rs1011765
Chromosome Location	chr21:41525052-41525053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10211913	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029005	0.82[EUR][1000 genomes]
rs11911749	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13046032	0.96[EUR][1000 genomes]
rs13046959	0.96[EUR][1000 genomes]
rs1474492	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs2837450	0.84[ASW][hapmap]
rs2837451	0.84[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs2837464	0.82[EUR][1000 genomes]
rs2837465	0.81[EUR][1000 genomes]
rs4816674	0.94[EUR][1000 genomes]
rs62237641	0.94[EUR][1000 genomes]
rs8130732	0.89[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs8132673	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9978731	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9983013	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1011765	C2CD2	cis	cerebellum	SCAN
rs1011765	B3GALT5	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
2	chr21:41510800-41525800	Weak transcription	Brain Germinal Matrix	brain
3	chr21:41517200-41528800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr21:41523200-41525400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr21:41523200-41525800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr21:41524600-41526400	Weak transcription	Fetal Brain Female	brain
7	chr21:41524600-41526800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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