Variant report

Variant	rs2837450
Chromosome Location	chr21:41512900-41512901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1011765	0.84[ASW][hapmap]
rs2837436	0.86[ASN][1000 genomes]
rs2837438	0.84[ASW][hapmap];0.85[ASN][1000 genomes]
rs741802	0.85[CHD][hapmap]
rs8134334	0.83[EUR][1000 genomes]
rs9978453	0.84[CHB][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2837450	TFF2	cis	cerebellum	SCAN
rs2837450	B3GALT5	cis	cerebellum	SCAN
rs2837450	PDE9A	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
3	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:41503000-41513200	Weak transcription	HMEC	breast
5	chr21:41503000-41518400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
7	chr21:41510200-41513200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr21:41510800-41513400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr21:41510800-41525800	Weak transcription	Brain Germinal Matrix	brain
10	chr21:41511000-41513000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr21:41511000-41513600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr21:41511000-41518600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr21:41512200-41513000	Weak transcription	Fetal Brain Female	brain
14	chr21:41512800-41513000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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