Variant report

Variant	rs9978453
Chromosome Location	chr21:41502267-41502268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1734936	0.90[EUR][1000 genomes]
rs2837429	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2837436	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2837438	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2837450	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs28838617	0.80[AMR][1000 genomes]
rs34869212	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs402435	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7280514	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7280922	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs741802	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs8134334	0.87[EUR][1000 genomes]
rs9981252	0.80[AMR][1000 genomes]
rs9981369	0.80[AMR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41491800-41510200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr21:41492400-41510400	Weak transcription	Fetal Brain Female	brain
3	chr21:41493000-41510200	Weak transcription	Brain Angular Gyrus	brain
4	chr21:41494200-41511600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr21:41494800-41506000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr21:41498400-41510200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr21:41499000-41504600	Weak transcription	Fetal Muscle Leg	muscle
8	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr21:41499600-41503000	Enhancers	HMEC	breast
10	chr21:41500000-41503000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr21:41500400-41510600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
13	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr21:41501800-41504200	Weak transcription	Aorta	Aorta
15	chr21:41502000-41502400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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