Variant report

Variant	rs9981369
Chromosome Location	chr21:41472941-41472942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2837429	0.83[EUR][1000 genomes]
rs2837438	0.90[CEU][hapmap]
rs28838617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34869212	0.84[EUR][1000 genomes]
rs399684	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs402435	0.90[CEU][hapmap]
rs449998	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7280514	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7280922	0.84[EUR][1000 genomes]
rs8128228	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9978453	0.90[CEU][hapmap];0.80[AMR][1000 genomes]
rs9981252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv587488	chr21:41452034-41477207	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv523501	chr21:41467826-41479698	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41447800-41473600	Weak transcription	Brain Angular Gyrus	brain
2	chr21:41470800-41477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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